MmuEX0045534 @ mm9
Exon Skipping
Gene
ENSMUSG00000026915 | Strbp
Description
spermatid perinuclear RNA binding protein [Source:MGI Symbol;Acc:MGI:104626]
Coordinates
chr2:37436193-37442074:-
Coord C1 exon
chr2:37442030-37442074
Coord A exon
chr2:37437121-37437224
Coord C2 exon
chr2:37436193-37436326
Length
104 bp
Sequences
Splice sites
3' ss Seq
TGCTCTTTTCTCCACTGTAGGTG
3' ss Score
11.76
5' ss Seq
CAGGTTGTC
5' ss Score
-1.28
Exon sequences
Seq C1 exon
GTTACGGAACCCCATATGGTTACAGCACAGCTGCCCCTGCATATG
Seq A exon
GTGGTTTTTTCATTGACAGCCCCTATTGCCAGCCTCTGAGCGTCGCACCATTTATTATTCACTTGGGCCCTCAAGATTTCTTCTCTGACTTCTAGAACCATCAG
Seq C2 exon
GTTAATACTTTTAAGCAGTTTTCAGCACGTTTATCTCACTTTATTCTCGTTCTCCTCGGACCTCCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTGTAAGCTGTGATCTCAGTATTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026915-'31-35,'31-34,34-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCATATGGTTACAGCACAGC
R:
CTTTGAATACTGAGATCACAGCTT
Band lengths:
170-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: