MmuEX0045534 @ mm10
Exon Skipping
Gene
ENSMUSG00000026915 | Strbp
Description
spermatid perinuclear RNA binding protein [Source:MGI Symbol;Acc:MGI:104626]
Coordinates
chr2:37580673-37586554:-
Coord C1 exon
chr2:37586510-37586554
Coord A exon
chr2:37581601-37581704
Coord C2 exon
chr2:37580673-37580806
Length
104 bp
Sequences
Splice sites
3' ss Seq
TGCTCTTTTCTCCACTGTAGGTG
3' ss Score
11.76
5' ss Seq
CAGGTTGTC
5' ss Score
-1.28
Exon sequences
Seq C1 exon
GTTACGGAACCCCATATGGTTACAGCACAGCTGCCCCTGCATATG
Seq A exon
GTGGTTTTTTCATTGACAGCCCCTATTGCCAGCCTCTGAGCGTCGCACCATTTATTATTCACTTGGGCCCTCAAGATTTCTTCTCTGACTTCTAGAACCATCAG
Seq C2 exon
GTTAATACTTTTAAGCAGTTTTCAGCACGTTTATCTCACTTTATTCTCGTTCTCCTCGGACCTCCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTGTAAGCTGTGATCTCAGTATTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026915_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.000 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000183690fB3963
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCATATGGTTACAGCACAGC
R:
CTTTGAATACTGAGATCACAGCTT
Band lengths:
170-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types