RnoEX0087160 @ rn6
Exon Skipping
Gene
ENSRNOG00000010150 | Strbp
Description
spermatid perinuclear RNA binding protein [Source:RGD Symbol;Acc:620673]
Coordinates
chr3:21828298-21834259:-
Coord C1 exon
chr3:21834215-21834259
Coord A exon
chr3:21829276-21829379
Coord C2 exon
chr3:21828298-21828501
Length
104 bp
Sequences
Splice sites
3' ss Seq
TGCTCTTTTCTCCACTGTAGGTG
3' ss Score
11.76
5' ss Seq
CAGGTTGTC
5' ss Score
-1.28
Exon sequences
Seq C1 exon
GTTATGGAACTCCATATGGTTACAGCACAGCTGCCCCTGCATATG
Seq A exon
GTGGTTTTTTCATTGACAGCCCCTATTGCCAGCCTCTGAGCGTCGCACCATTTATTATTCACTTGGGTCCTCAAGATTTCTTCTCTGACTTCTAGAACCATCAG
Seq C2 exon
GTTAATACTTTTAAGCAGTTTTCAGCACGTTTATCTCACTTTATTCTCGTTCTCCTCGGACCTCCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTGTAAGCTGTGATCTCAGTATTCAAAGGTAAGCTCTTTTATTTTCTGATTAAAGAAAACAGTAACCAATTAACACAACCTGCATATATGACAATCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010150_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000087611fB14523
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACTCCATATGGTTACAGCACA
R:
TGATTGTCATATATGCAGGTTGTGT
Band lengths:
243-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]