MmuEX0046267 @ mm9
Exon Skipping
Gene
ENSMUSG00000064289 | Tank
Description
TRAF family member-associated Nf-kappa B activator [Source:MGI Symbol;Acc:MGI:107676]
Coordinates
chr2:61465778-61481842:+
Coord C1 exon
chr2:61465778-61465896
Coord A exon
chr2:61467342-61467429
Coord C2 exon
chr2:61481772-61481842
Length
88 bp
Sequences
Splice sites
3' ss Seq
AACTTTCTTTGCTTGGCTAGCTT
3' ss Score
4.62
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
ATAACAGTTATGGCTATGTACCTTTGCTTGAAGACAGTGACAGAAGGAAGAATAATTTGACCCTTGATGAACCACATGATAAAGTGAAACTAGGAACACTGAGAGATAAGCAATCAAAG
Seq A exon
CTTATTTCCAAAGAATTAATAATGCTGCACCAATTGTACTGTATTTGTGGACAGACCATGGAACAAGGTCTAAAGAAATAATCTCTGG
Seq C2 exon
GTGAGACGACAAGAAGTTTCTTCTGGAAAAGAATCCGCCAAGGGTCTCAACATCCCTCTGCATCACGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064289_MULTIEX2-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.642 A=0.000 C2=0.875
Domain overlap (PFAM):
C1:
PF067856=UPF0242=PD(15.4=35.0)
A:
NO
C2:
PF128452=TBD=PU(10.9=20.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTTGCTTGAAGACAGTGACA
R:
CGTGATGCAGAGGGATGTTGA
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types