MmuALTA0004972-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000026832 | Cytip
Description
cytohesin 1 interacting protein [Source:MGI Symbol;Acc:MGI:2183535]
Coordinates
chr2:58012448-58047928:-
Coord C1 exon
chr2:58047857-58047928
Coord A exon
chr2:58012453-58012677
Coord C2 exon
chr2:58012448-58012452
Length
225 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
TTTTTTTTTTTTAATTGTAGAAA
3' ss Score
9.49
Exon sequences
Seq C1 exon
CTCCCTCCTTGCAAGGCTCAGCTCTGCCATTAGTCCAGTCGATTCTGCCTCCTCTAGCCTGCTTCAACACAG
Seq A exon
AAAAGGAACGCAAGGTTCTCTCAGGAGCACTGGAGAGTAGGAGTGACCTCCTCTATAGGCTTTGTGCAACAGTGTCTCAAACCACAGCAGTCACATGGGTTCTGTTGGCTTTGCTACTTTTTCGACTGCGTGTCAGAGGGCTGTGCATTTCGCTTCCTCCCTCCTGCAAGGCCAGGGAACCATGTGTTGGCGGGATTAATCTTTGCCCACAATGTCTCTGCAAAG
Seq C2 exon
GTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026832-0-4,0-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: