MmuINT0113710 @ mm9
Intron Retention
Gene
ENSMUSG00000042359 | Osbpl6
Description
oxysterol binding protein-like 6 [Source:MGI Symbol;Acc:MGI:2139014]
Coordinates
chr2:76406166-76407100:+
Coord C1 exon
chr2:76406166-76406299
Coord A exon
chr2:76406300-76407076
Coord C2 exon
chr2:76407077-76407100
Length
777 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
TTTCTGGTGCCTTGGATCAGAGT
3' ss Score
4.37
Exon sequences
Seq C1 exon
TGCATTCTCTTCTGAAGTCTGCATTTAACAGCATAGCTATAGAGAAGGAGAAGCTGAAGCAGGTGGTCTCGGAGCAAGATCACAACAAAGGCCACAGCACACAGATGGCCAGACTCCGGCAGTCACTGTCACAG
Seq A exon
GTAAACCCAAGCGGTTTTGTATGCATGGCCAACAAAAGATTCTAGGCAAAGGGTGAGGGAGCGTGGAGGCCACCGTTTCAGGGGGTGGGGGTGGGGAAGTGTGGGGGAGGGTGGCGTGTTCCTCTGACATTCTCCCAAGACATTGCAGAGTCAGTCTTGAATTTTATTAGTTTTCTCCTCTAAAAATGTCGAGGTAAGGTAAAAAGGAGCAGAAATTGCTGAGTATATGTAATTGTTTTTTAGACTACTTGAATTAATGTCTGGGGTCATTTGTCAGCCCCTGATTTAAAAGAAAAGGAAACCTACAAGCATTTATACATGATTTACATGTTTAAGGAATATTCCAGAATATATTCAATCCAATGGTTAATAAAACAAAATCTACTGAGTCTTCCACACTTTGTGTTTTCCCACTTAGACTTTAATCTGTTGAAAGTTACATATTACTACAAACCTGTTTCTTTTATGATTTGCACACCTGGGGTTCTCTTCTGTCCATTATGCTCCCTGAGTTAGACGTTTATATTTTAGTATAGGTCATATTTCATCTTACTAATAGCTAACGCACCCCTGTATACCTCAGAGTTGAGGTTTTGGTTATCAATTCTTGAAAGCCGCACACTTCTTCCTCTATAATGAGCATCTTCTCCAGTCAGTCCTTAAATGCACTCGGTTTGATTCCTTTGAGCATGCAATGCTGTGATGTAATTTTTTTTCCGTGTGTGAGAACTCAGTGTTTATATACAATATTGTTCACTTTCTGGTGCCTTGGATCAG
Seq C2 exon
AGTGAAGGAGCCGGCAAATCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042359-Osbpl6:NM_145525:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=NA C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: