DreINT0108863 @ danRer10
Intron Retention
Gene
ENSDARG00000063730 | osbpl6
Description
oxysterol binding protein-like 6 [Source:ZFIN;Acc:ZDB-GENE-070912-206]
Coordinates
chr9:1407749-1409225:-
Coord C1 exon
chr9:1409095-1409225
Coord A exon
chr9:1407857-1409094
Coord C2 exon
chr9:1407749-1407856
Length
1238 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
CTCCACATTCATCTGTCCAGGCC
3' ss Score
5.48
Exon sequences
Seq C1 exon
TGCACTCTCTTCTGAAGTCTGCCTTCAACACTGTGGCCATAGAGAAAGAGAAGATCAAGCAGGTGCTGCTGGACCATGAACAAACCGGCCAATCAAATCAGATTGTTACCCTCCGCCGCTCCCTATCACAG
Seq A exon
GTCAGCACCGCCAACCACCTACTGTTACCTTTATAACCACCATCAACACACACTTCTGATTTATCTCTGTAGAATGGATAAACATTGCATAGAAAAAAAGACTGCAGGTGGCTTTGATTTTGCTGTGTCAAATTCTGATTTTCAAAATTAGAGTCCCACATACATAGTAAGTTTACCACTCTGGGGAGATTCTGAATCTTAATGAATCTTAACTCTTATTATTTAAATATGCCTAGGTGTACCCATATTTACGAATAGTACTGTTATTCAGTCACTTTGCTGTGTTTCCTGTTTTCAAAATAAGAGTCCCACATACATGGTAAGTTTAATATAAGCTTTGATGATGTAGAACATGACCTAAAGTACATGTAAATTTTAATGGTAATGTAATGTGTATTTATATAGTGCATTTATTGGGTATGTTCATACACCCAAAGCGCTTCACAATCATGAGGGGGGTCTCTCCACACCCCCACCAGTGTGCAGCTCCTCTTGGATGATGCGACGGCAGCCACAGGACAACGGTGCCAGTGCGTTCACCACACACCAGCTATTGGTGGAGTGGAGAGACAGTGATAGAGCCTGATTGGTGGATTGGGAGGTCATGATTGTAAGGGCCAATAGAGGGACTTTGGCCAGGACACCCTGCTCTTTCACGAGTGTCATGGGATTTTTAATGACCACAGAGAGTCAGGACCTCGGTTTAACGTCTCATCCGAAAGACTTCACCCACTGACAGTGTAGTGTCCCCTTCACTTTACTGGGGCATTAGGACTCACGCAGACCACAGGTTGAGCGCCCCCTGCTGGCCTCACTAACACCACTTCCAACAGCAACCTAGTGTTCACATGTGGTCTCCCATCCGAACACTGACCAGACTCAGCTCTGCTTCAGTGAGTAACCGCTCTTGGACTGCAGGGTGACATGGCTGTGACAGAATAGTGTACTAATGAATAACACGCAACAGTCTGCTTTGTGTTGTGATTGGCTTGTTATTCATCGGGATTTTATGCTCGTGTAATTAACATCAGAACAAGGAAACAATGATGTCTGAGGCTCACGGTATGCACATCTCCATATGCTGAACTCTTAGTATTCAGCTATGCCTGGCTATACCCAGATTTTCTTCATAAGGCACCTTAGAAAACAGCTTTACTGTTCTGTCTTCTGGTATAAAAAGAAAAAAAGGTTCGTTATTAATTGAACATAAATGAACGTCTCCACATTCATCTGTCCAG
Seq C2 exon
GCCTTGTCCCAGAATGCCGAGCTGAAGACGCGTCTGAACCGGATCCACTCAGAGTCGGTCCTGTCGGAGCAGGTCGTCAGTGTCAACATCATCAGCAGTCCTGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063730:ENSDART00000124777:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTCTCTTCTGAAGTCTGCC
R:
CTCGTCAGGACTGCTGATGATG
Band lengths:
238-1476
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]