GgaINT0047056 @ galGal4
Intron Retention
Gene
ENSGALG00000009172 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:HGNC:16388]
Coordinates
chr7:14946123-14948362:-
Coord C1 exon
chr7:14948232-14948362
Coord A exon
chr7:14946231-14948231
Coord C2 exon
chr7:14946123-14946230
Length
2001 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TGTGCAATTTTTATTTTAAGGCT
3' ss Score
7.22
Exon sequences
Seq C1 exon
TGCATTCTCTTTTGAAGTCTGCCTTTAACAGCATAGCTATAGAGAAGGAGAAGCTCAAGCAGATCGTCTCAGAGCAGGATCTTACCGGTCACAATGCTCAAATAGCACACCTCAGACAGTCCCTTTCCCAG
Seq A exon
GTATGTTCTTGATTTGATTGCAAGCTCAGCTAGTTTGCGAGATGCACTGTTTCTTTGTGTTTTGGCTATTCCCTGAGGTAGAGGGAGCCAAGAAAAAACCAGCAAGGTTCTTAACCAGAACTATGGCATATATTCTGTTGTGGACATGAGAACATAGGTCCAACCTCAGTGCATGTGGAGGATATATATATCTTTTTTGTAAGCTTTTATTTTACATTGGAAAATTATAATAAATACGAGTATCAACCATTTTTATGGGAATGATAGATATCTTTTTTGGAGCTGCCCCTAGCACATTCAAAGAGATTCTCTAGTTTTCTTAATTAAGTTTTAAATTTTGACTGTATATTTTCAGATTTGTTTTATATGTCCTTGTCTCCAACTGCAAAAGGAATTATGCGTTACAGAATAATCATGGGTAAATTGGATTTTCAGATCCAAACCTGTTATTGGCCTCTCCCACTTAAGCTAAAGGAAAATTTGTCATTGGCTTTAGTTGGGAAGAAGAGATGAAGTTACAGTCAGTGCTTTGGTGAACTACCCTACACCACTCCATGAGATGTATCTTCAGGTTGCAAAACAACTCCAATTTTTGAATTTAGAAAAGCTTGTGTAAGCAAGAAATGAGAGCAGATGTGTAAAGACGAATAGAACTTGACCCAAATGTGAAGATAATTTCATGCAGTTTTATTGTTACTGAGTTGTATTTTTTTGCCGTGAAATTAAAATTGAGACATAATGTTTCTTTAGACATAGATGCATGATGTTACACAGATTGATTGCTGCATATGGCAATAAAGAAAGATTTAACCAGGACTTGTGGAGACTTGCTAGCAACTGGTATGAAATAGATGGTGCTATGTTCCTCTTGTTCTTGGCCTCCAGTGTCAGTCTGAAAATCACTGTCACTCATCAGTTAATTGTCTCAATGGGCAGTAAATGGAAATTTAGCATAGTCGATCTCTTAACCAGGTTTTGGCAGTTTAGGAAGCTACAGCCCAGCTGATGTTATGGTGTAAACTTACATCTCCCCTTCCATGTGAACATGCCCAGATCATTTCCAAACAAAGCAAAATGGCATCGTTTAAACTGTCTTCAGTGACTGTTTAAGCCTATTTTACTTTGATCCTACTTTGTTTCAGTGCAATCATGCAGTCTGTTCCAGGGGAAGGAGAGGAAAGATTTTGACTCTCTGGCAACAATAATTGCCCACTACAACAGCATGTCTGCTGTTCTATAATTCCCAGTGCGAGGGATATATTAGGTTTAAGTCAATTCATGTTCTGGCTGTGTAACATATTATACTTTCTTGGATTTCAACAGATATGCAGTCATGTCCTTCTAGACATCAAGCGATGTGTATATGTACCCATGTTTATAATCCAGCTTGGGCATTAAAAGAGGAGAAAAGTTAGCAGATACCAGGCACCAATTACATTCTACTGGCATCAGTTTATTTTGTGGTCCATAGTTTTTTGTGAGCACACACATGCAAATACAGCAGCTGGGTCTGGACAGACAGACACCCAGTGATGCTAATGATTTTGTTGTTTTCTTCTGAAAAGCAGGCAGTTTCCTTCCGTGGGCTGTAAGAGTTGATAACCATCATTCAGAAAGTGCTGTTAAGCCATAAATCAAGAATATTGCAGTTGGTTCCTTTTCATCATTCTGCAGTTTCATTCTTTCTTGCTACATTCCCTCCCCATTTCCGTAATGCACATAAGCCACTGGCATAGCTGCCAAAGAGCTACTTGAAGAATTAAGGTAGAATGTGACTTATGTTGTGGGAGAGTATTGGTGCCCTCTGACCCTGGAAAATAATTGAAGGCAAGCCAATGAGAAGATGAAATGATGTTAGAGAGGGTCTTGAAATGAAAGAAATTGGGTTCTGTGACTTTTTCTTTTTACAAAATTTCCCAGGTTAAGATTTTTTTTTAATATTTTTTGTCTGTTTAACACTTCTTTTTATTTGTAAATAAAATGTGCAATTTTTATTTTAAG
Seq C2 exon
GCTCTCAACCAGAATGCTGAACTAAGGAGTCGCTTGAACAGAATACATTCAGAATCTGTTATTTGTGATCAGGTTGTCAGTGTAAATATTATCCCTAGTCCTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009172:ENSGALT00000014942:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.028
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]