GgaINT0047056 @ galGal3
Intron Retention
Gene
ENSGALG00000009172 | E1BQU1_CHICK
Description
NA
Coordinates
chr7:16543552-16545791:-
Coord C1 exon
chr7:16545661-16545791
Coord A exon
chr7:16543660-16545660
Coord C2 exon
chr7:16543552-16543659
Length
2001 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TGTGCAATTTTTATTTTAAGGCT
3' ss Score
7.22
Exon sequences
Seq C1 exon
TGCATTCTCTTTTGAAGTCTGCCTTTAACAGCATAGCTATAGAGAAGGAGAAGCTCAAGCAGATCGTCTCAGAGCAGGATCTTACCGGTCACAATGCTCAAATAGCACACCTCAGACAGTCCCTTTCCCAG
Seq A exon
GTATGTTCTTGATTTGATTGCAAGCTCAGCTAGTTTGCGAGATGCACTGTTTCTTTGTGTTTTGGCTATTCCCTGAGGTAGAGGGAGCCAAGAAAAAACCAGCAAGGTTCTTAACCAGAACTATGGCATATATTCTGTTGTGGACATGAGAACATAGGTCCAACCTCAGTGCATGTGGAGGATATATATATCTTTTTTGTAAGCTTTTATTTTACATTGGAAAATTATAATAAATACGAGTATCAACCATTTTTATGGGAATGATAGATATCTTTTTTGGAGCTGCCCCTAGCACATTCAAAGAGATTCTCTAGTTTTCTTAATTAAGTTTTAAATTTTGACTGTATATTTTCAGATTTGTTTTATATGTCCTTGTCTCCAACTGCAAAAGGAATTATGCGTTACAGAATAATCATGGGTAAATTGGATTTTCAGATCCAAACCTGTTATTGGCCTCTCCCACTTAAGCTAAAGGAAAATTTGTCATTGGCTTTAGTTGGGAAGAAGAGATGAAGTTACAGTCAGTGCTTTGGTGAACTACCCTACACCACTCCATGAGATGTATCTTCAGGTTGCAAAACAACTCCAATTTTTGAATTTAGAAAAGCTTGTGTAAGCAAGAAATGAGAGCAGATGTGTAAAGACGAATAGAACTTGACCCAAATGTGAAGATAATTTCATGCAGTTTTATTGTTACTGAGTTGTATTTTTTTGCCGTGAAATTAAAATTGAGACATAATGTTTCTTTAGACATAGATGCATGATGTTACACAGATTGATTGCTGCATATGGCAATAAAGAAAGATTTAACCAGGACTTGTGGAGACTTGCTAGCAACTGGTATGAAATAGATGGTGCTATGTTCCTCTTGTTCTTGGCCTCCAGTGTCAGTCTGAAAATCACTGTCACTCATCAGTTAATTGTCTCAATGGGCAGTAAATGGAAATTTAGCATAGTCGATCTCTTAACCAGGTTTTGGCAGTTTAGGAAGCTACAGCCCAGCTGATGTTATGGTGTAAACTTACATCTCCCCTTCCATGTGAACATGCCCAGATCATTTCCAAACAAAGCAAAATGGCATCGTTTAAACTGTCTTCAGTGACTGTTTAAGCCTATTTTACTTTGATCCTACTTTGTTTCAGTGCAATCATGCAGTCTGTTCCAGGGGAAGGAGAGGAAAGATTTTGACTCTCTGGCAACAATAATTGCCCACTACAACAGCATGTCTGCTGTTCTATAATTCCCAGTGCGAGGGATATATTAGGTTTAAGTCAATTCATGTTCTGGCTGTGTAACATATTATACTTTCTTGGATTTCAACAGATATGCAGTCATGTCCTTCTAGACATCAAGCGATGTGTATATGTACCCATGTTTATAATCCAGCTTGGGCATTAAAAGAGGAGAAAAGTTAGCAGATACCAGGCACCAATTACATTCTACTGGCATCAGTTTATTTTGTGGTCCATAGTTTTTTGTGAGCACACACATGCAAATACAGCAGCTGGGTCTGGACAGACAGACACCCAGTGATGCTAATGATTTTGTTGTTTTCTTCTGAAAAGCAGGCAGTTTCCTTCCGTGGGCTGTAAGAGTTGATAACCATCATTCAGAAAGTGCTGTTAAGCCATAAATCAAGAATATTGCAGTTGGTTCCTTTTCATCATTCTGCAGTTTCATTCTTTCTTGCTACATTCCCTCCCCATTTCCGTAATGCACATAAGCCACTGGCATAGCTGCCAAAGAGCTACTTGAAGAATTAAGGTAGAATGTGACTTATGTTGTGGGAGAGTATTGGTGCCCTCTGACCCTGGAAAATAATTGAAGGCAAGCCAATGAGAAGATGAAATGATGTTAGAGAGGGTCTTGAAATGAAAGAAATTGGGTTCTGTGACTTTTTCTTTTTACAAAATTTCCCAGGTTAAGATTTTTTTTTAATATTTTTTGTCTGTTTAACACTTCTTTTTATTTGTAAATAAAATGTGCAATTTTTATTTTAAG
Seq C2 exon
GCTCTCAACCAGAATGCTGAACTAAGGAGTCGCTTGAACAGAATACATTCAGAATCTGTTATTTGTGATCAGGTTGTCAGTGTAAATATTATCCCTAGTCCTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009172:ENSGALT00000014942:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.028
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]