Special

MmuEX0033236 @ mm9

Exon Skipping

Gene
ENSMUSG00000042359 | Osbpl6
Description
oxysterol binding protein-like 6 [Source:MGI Symbol;Acc:MGI:2139014]
Coordinates
chr2:76406166-76415176:+
Coord C1 exon
chr2:76406166-76406299
Coord A exon
chr2:76407077-76407100
Coord C2 exon
chr2:76415069-76415176
Length
24 bp
Sequences
Splice sites
3' ss Seq
TTTCTGGTGCCTTGGATCAGAGT
3' ss Score
4.37
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
TGCATTCTCTTCTGAAGTCTGCATTTAACAGCATAGCTATAGAGAAGGAGAAGCTGAAGCAGGTGGTCTCGGAGCAAGATCACAACAAAGGCCACAGCACACAGATGGCCAGACTCCGGCAGTCACTGTCACAG
Seq A exon
AGTGAAGGAGCCGGCAAATCCTGG
Seq C2 exon
GCACTTAACCAGAACGCTGAGCTCCGGAGTCGGCTGAACAGAATACACTCAGAGTCTACCATTTGTGATCACGTTGTCAGTGTAAATATTATCCCTAGCCCCGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042359_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.556 A=0.125 C2=0.254
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000077123





     
                   









    
Main Skipping Isoform:
ENSMUSP00000088290





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000107560, ENSMUSP00000107561
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr2:179227332-179227355 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr2:18509043-18509066 
ALTERNATIVE
BtaEX0025487
(OSBPL6)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GAAGCTGAAGCAGGTGGTCTC

				
R: 
GGAGCTCAGCGTTCTGGTTAA

				
Band lengths: 
110-134

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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