MmuEX0033236 @ mm10
Exon Skipping
Gene
ENSMUSG00000042359 | Osbpl6
Description
oxysterol binding protein-like 6 [Source:MGI Symbol;Acc:MGI:2139014]
Coordinates
chr2:76568109-76577119:+
Coord C1 exon
chr2:76568109-76568242
Coord A exon
chr2:76569020-76569043
Coord C2 exon
chr2:76577012-76577119
Length
24 bp
Sequences
Splice sites
3' ss Seq
TTTCTGGTGCCTTGGATCAGAGT
3' ss Score
4.37
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
TGCATTCTCTTCTGAAGTCTGCATTTAACAGCATAGCTATAGAGAAGGAGAAGCTGAAGCAGGTGGTCTCGGAGCAAGATCACAACAAAGGCCACAGCACACAGATGGCCAGACTCCGGCAGTCACTGTCACAG
Seq A exon
AGTGAAGGAGCCGGCAAATCCTGG
Seq C2 exon
GCACTTAACCAGAACGCTGAGCTCCGGAGTCGGCTGAACAGAATACACTCAGAGTCTACCATTTGTGATCACGTTGTCAGTGTAAATATTATCCCTAGCCCCGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042359_MULTIEX1-22/23=21-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.552 A=0.167 C2=0.260
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCTGAAGCAGGTGGTCTC
R:
GGAGCTCAGCGTTCTGGTTAA
Band lengths:
110-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types