RnoEX0062529 @ rn6
Exon Skipping
Gene
ENSRNOG00000010812 | Osbpl6
Description
oxysterol binding protein-like 6 [Source:RGD Symbol;Acc:1308887]
Coordinates
chr3:63424179-63431820:+
Coord C1 exon
chr3:63424179-63424312
Coord A exon
chr3:63425059-63425082
Coord C2 exon
chr3:63431713-63431820
Length
24 bp
Sequences
Splice sites
3' ss Seq
TTCCTGGTGCCTTGGATCAGAGT
3' ss Score
4.03
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
TGCATTCTCTTCTGAAGTCTGCGTTTAACAGCATAGCTATAGAGAAGGAGAAGCTGAAGCAGATGGTTTCGGAGCAAGATCACAACAAAGGCCACAGCACACAGATGGCCAGGCTCCGACAGTCGCTGTCACAG
Seq A exon
AGTGAAGGAGCCGGCAAATCCTGG
Seq C2 exon
GCACTTAACCAGAACGCTGAGCTCCGGAGTCGACTGAACAGAATACACTCGGAGTCTACCATTTGTGATCACGTTGTCAGTGTAAATATTATCCCTAGCCCTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010812_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.572 A=0.250 C2=0.312
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000091211fB10130
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATGGTTTCGGAGCAAGA
R:
TCTGTTCAGTCGACTCCGGAG
Band lengths:
118-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]