BtaEX0025487 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014405 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:HGNC:16388]
Coordinates
chr2:18502529-18510027:-
Coord C1 exon
chr2:18509944-18510027
Coord A exon
chr2:18509043-18509066
Coord C2 exon
chr2:18502529-18502636
Length
24 bp
Sequences
Splice sites
3' ss Seq
TTCCTGGTGCCTTGGATCAGAGC
3' ss Score
4.23
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
TGCATTCTCTTTTGAAGTCTGCATTTAATAGCATAGCTATAGAGAAGGAGAAGCTGAAGCAGATGGTTTCTGAGCAGGATCACA
Seq A exon
AGCGAAGGAGCGAGCAAATCCTGG
Seq C2 exon
GCACTCAACCAGAATGCTGAACTAAGGAGCCGGTTGAACAGAATACATTCAGAATCTATTATTTGTGATCAGGTTGTTAGTGTAAATATTATTCCTAGCCCTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014405_MULTIEX1-1/12=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.522 A=0.125 C2=0.028
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000019160fB4920
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATTCTCTTTTGAAGTCTGCA
R:
ACCGGCTCCTTAGTTCAGCAT
Band lengths:
118-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development