BtaEX0025488 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014405 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:HGNC:16388]
Coordinates
chr2:18500520-18510027:-
Coord C1 exon
chr2:18509944-18510027
Coord A exon
chr2:18502529-18502636
Coord C2 exon
chr2:18500520-18500657
Length
108 bp
Sequences
Splice sites
3' ss Seq
GCGGTTTTTGTTATTTTAAGGCA
3' ss Score
6.92
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
TGCATTCTCTTTTGAAGTCTGCATTTAATAGCATAGCTATAGAGAAGGAGAAGCTGAAGCAGATGGTTTCTGAGCAGGATCACA
Seq A exon
GCACTCAACCAGAATGCTGAACTAAGGAGCCGGTTGAACAGAATACATTCAGAATCTATTATTTGTGATCAGGTTGTTAGTGTAAATATTATTCCTAGCCCTGATGAG
Seq C2 exon
GCTGGTGAGCAAATCCACGTCAGTCTCCCCCTGTCACAGCAAGTAGCCAATGAGAGCCGCCTCTCCATGTCAGAATCTGTCTCTGAGTTCTTCGATGCCCAAGAAGTGCTCCTCTCTGCAAGCTCATCAGAGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014405_MULTIEX1-2/12=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.522 A=0.028 C2=0.272
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATTCTCTTTTGAAGTCTGCA
R:
TTCTCTGATGAGCTTGCAGAGA
Band lengths:
218-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development