DreEX6034686 @ danRer10
Exon Skipping
Gene
ENSDARG00000063730 | osbpl6
Description
oxysterol binding protein-like 6 [Source:ZFIN;Acc:ZDB-GENE-070912-206]
Coordinates
chr9:1407424-1409225:-
Coord C1 exon
chr9:1409095-1409225
Coord A exon
chr9:1407749-1407856
Coord C2 exon
chr9:1407424-1407561
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTCCACATTCATCTGTCCAGGCC
3' ss Score
5.48
5' ss Seq
GAGGTCTGA
5' ss Score
2.68
Exon sequences
Seq C1 exon
TGCACTCTCTTCTGAAGTCTGCCTTCAACACTGTGGCCATAGAGAAAGAGAAGATCAAGCAGGTGCTGCTGGACCATGAACAAACCGGCCAATCAAATCAGATTGTTACCCTCCGCCGCTCCCTATCACAG
Seq A exon
GCCTTGTCCCAGAATGCCGAGCTGAAGACGCGTCTGAACCGGATCCACTCAGAGTCGGTCCTGTCGGAGCAGGTCGTCAGTGTCAACATCATCAGCAGTCCTGACGAG
Seq C2 exon
GCCTGTGAGCCTCTGCATGTGGGTCTGCCTCTCTCTCAGCAGGTCTCAAACGAGAGCAGACTCTCCATGTCAGAGTCGGTGTCGGAGTTCTTCGATGCTCAGGAGGTGCTTCTGTCCGCAAGCTCATCTGAGAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063730-'12-14,'12-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.283
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCAACACTGTGGCCATA
R:
CTCAGATGAGCTTGCGGACAG
Band lengths:
243-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]