GgaEX0013485 @ galGal3
Exon Skipping
Gene
ENSGALG00000009172 | E1BQU1_CHICK
Description
NA
Coordinates
chr7:16541215-16545791:-
Coord C1 exon
chr7:16545661-16545791
Coord A exon
chr7:16543552-16543659
Coord C2 exon
chr7:16541215-16541352
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGTGCAATTTTTATTTTAAGGCT
3' ss Score
7.22
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
TGCATTCTCTTTTGAAGTCTGCCTTTAACAGCATAGCTATAGAGAAGGAGAAGCTCAAGCAGATCGTCTCAGAGCAGGATCTTACCGGTCACAATGCTCAAATAGCACACCTCAGACAGTCCCTTTCCCAG
Seq A exon
GCTCTCAACCAGAATGCTGAACTAAGGAGTCGCTTGAACAGAATACATTCAGAATCTGTTATTTGTGATCAGGTTGTCAGTGTAAATATTATCCCTAGTCCTGATGAG
Seq C2 exon
ACGGGTGAACAAATTCATGTCAGTTTGCCATTGTCTCAGCAAGTTTCCAATGAGAGCAGGCTCTCTATGTCTGAATCAGTGTCAGAGTTCTTTGATGCACAGGAGGTGCTTTTGTCTGCCAGCTCGTCAGAAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009172-'21-20,'21-19,22-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.028 C2=0.283
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTGCCTTTAACAGCATAGCT
R:
TTTTCTGACGAGCTGGCAGAC
Band lengths:
250-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]