GgaEX6042217 @ galGal3
Exon Skipping
Gene
ENSGALG00000009172 | E1BQU1_CHICK
Description
NA
Coordinates
chr7:16540090-16543659:-
Coord C1 exon
chr7:16543552-16543659
Coord A exon
chr7:16541215-16541352
Coord C2 exon
chr7:16540090-16540174
Length
138 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTGCGTTATTTGCAGACG
3' ss Score
9.97
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
GCTCTCAACCAGAATGCTGAACTAAGGAGTCGCTTGAACAGAATACATTCAGAATCTGTTATTTGTGATCAGGTTGTCAGTGTAAATATTATCCCTAGTCCTGATGAG
Seq A exon
ACGGGTGAACAAATTCATGTCAGTTTGCCATTGTCTCAGCAAGTTTCCAATGAGAGCAGGCTCTCTATGTCTGAATCAGTGTCAGAGTTCTTTGATGCACAGGAGGTGCTTTTGTCTGCCAGCTCGTCAGAAAATGAG
Seq C2 exon
GCTTCTGATGATGAATCCTATATCAGTGATGTGAGTGATAATATATCTGAGGACAACACCAGCGTCGCTGACATTTCTCGGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009172-'22-21,'22-20,23-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.283 C2=0.655
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCAACCAGAATGCTGAACT
R:
TTTGCCGAGAAATGTCAGCGA
Band lengths:
193-331
Functional annotations
There are 2 annotated functions for this event
PMID: 15212954
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: glutathione s tranferase tag, pull down. ELM ID: ELMI001272; ELM sequence: ESVSEFFDAQE; Overlap: FULL
PMID: 17804640
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: cross linking study, detection by mass spectrometry. ELM ID: ELMI001272; ELM sequence: ESVSEFFDAQE; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]