BtaEX6008883 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014405 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:HGNC:16388]
Coordinates
chr2:18493729-18502636:-
Coord C1 exon
chr2:18502529-18502636
Coord A exon
chr2:18500520-18500657
Coord C2 exon
chr2:18493729-18493816
Length
138 bp
Sequences
Splice sites
3' ss Seq
TCTACTTTTCTCTCCTGTAGGCT
3' ss Score
11.79
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GCACTCAACCAGAATGCTGAACTAAGGAGCCGGTTGAACAGAATACATTCAGAATCTATTATTTGTGATCAGGTTGTTAGTGTAAATATTATTCCTAGCCCTGATGAG
Seq A exon
GCTGGTGAGCAAATCCACGTCAGTCTCCCCCTGTCACAGCAAGTAGCCAATGAGAGCCGCCTCTCCATGTCAGAATCTGTCTCTGAGTTCTTCGATGCCCAAGAAGTGCTCCTCTCTGCAAGCTCATCAGAGAATGAG
Seq C2 exon
GCTTCAGATGATGAGTCTTACATCAGTGATGTGAGTGATAATATATCTGAAGACAACACCAGTGTTGCAGACAACATCTCTCGGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014405-'21-20,'21-19,22-20=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.272 C2=0.650
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTCAACCAGAATGCTGAAC
R:
TTGCCGAGAGATGTTGTCTGC
Band lengths:
195-333
Functional annotations
There are 2 annotated functions for this event
PMID: 15212954
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: glutathione s tranferase tag, pull down. ELM ID: ELMI001272; ELM sequence: ESVSEFFDAQE; Overlap: FULL
PMID: 17804640
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: cross linking study, detection by mass spectrometry. ELM ID: ELMI001272; ELM sequence: ESVSEFFDAQE; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]