DreEX6034687 @ danRer10
Exon Skipping
Gene
ENSDARG00000063730 | osbpl6
Description
oxysterol binding protein-like 6 [Source:ZFIN;Acc:ZDB-GENE-070912-206]
Coordinates
chr9:1404710-1407856:-
Coord C1 exon
chr9:1407749-1407856
Coord A exon
chr9:1407424-1407561
Coord C2 exon
chr9:1404710-1404797
Length
138 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTGTTGCAGGCC
3' ss Score
11.78
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
GCCTTGTCCCAGAATGCCGAGCTGAAGACGCGTCTGAACCGGATCCACTCAGAGTCGGTCCTGTCGGAGCAGGTCGTCAGTGTCAACATCATCAGCAGTCCTGACGAG
Seq A exon
GCCTGTGAGCCTCTGCATGTGGGTCTGCCTCTCTCTCAGCAGGTCTCAAACGAGAGCAGACTCTCCATGTCAGAGTCGGTGTCGGAGTTCTTCGATGCTCAGGAGGTGCTTCTGTCCGCAAGCTCATCTGAGAACGAG
Seq C2 exon
GCCTCTGATGATGAGTCTTACGTCAGTGATGTGAGTGATAATATTTCCGAGGACAATGCCAGCGTCACAGATAACGTTTCCAGACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063730-'13-15,'13-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.283 C2=0.967
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGTCCCAGAATGCCGAG
R:
TCTGTCTGGAAACGTTATCTGTGAC
Band lengths:
195-333
Functional annotations
There are 2 annotated functions for this event
PMID: 15212954
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: glutathione s tranferase tag, pull down. ELM ID: ELMI001272; ELM sequence: ESVSEFFDAQE; Overlap: FULL
PMID: 17804640
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: cross linking study, detection by mass spectrometry. ELM ID: ELMI001272; ELM sequence: ESVSEFFDAQE; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]