RnoEX6017496 @ rn6
Exon Skipping
Gene
ENSRNOG00000010812 | Osbpl6
Description
oxysterol binding protein-like 6 [Source:RGD Symbol;Acc:1308887]
Coordinates
chr3:63431713-63438804:+
Coord C1 exon
chr3:63431713-63431820
Coord A exon
chr3:63433679-63433816
Coord C2 exon
chr3:63438717-63438804
Length
138 bp
Sequences
Splice sites
3' ss Seq
TCTGCTCCTCTCTCCTGTAGCCT
3' ss Score
10.5
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GCACTTAACCAGAACGCTGAGCTCCGGAGTCGACTGAACAGAATACACTCGGAGTCTACCATTTGTGATCACGTTGTCAGTGTAAATATTATCCCTAGCCCTGATGAG
Seq A exon
CCTGGTGAGCAGATCCACGCCAACCTCCCCCTGTCACAGCAGGTGGTCAACGAGAGCCGCCTCTCCATGTCGGAATCCGTGTCAGAGTTCTTCGATGCCCAAGAGGTGCTCCTGTCTGCGAGTTCATCGGAGAATGAG
Seq C2 exon
GCTTCCGATGACGAGTCCTACATCAGCGACGTGAGTGACAACATATCTGAGGACAACACCAGTGTCGCCGACAACATTTCTCGGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010812-'25-33,'25-29,26-33=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.312 A=0.391 C2=0.800
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTAACCAGAACGCTGAGCT
R:
TTTGCCGAGAAATGTTGTCG
Band lengths:
195-333
Functional annotations
There are 2 annotated functions for this event
PMID: 15212954
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: glutathione s tranferase tag, pull down. ELM ID: ELMI001272; ELM sequence: ESVSEFFDAQE; Overlap: FULL
PMID: 17804640
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: cross linking study, detection by mass spectrometry. ELM ID: ELMI001272; ELM sequence: ESVSEFFDAQE; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]