HsaEX6016882 @ hg19
Exon Skipping
Gene
ENSG00000079156 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:16388]
Coordinates
chr2:179236853-179247234:+
Coord C1 exon
chr2:179236853-179236960
Coord A exon
chr2:179238617-179238754
Coord C2 exon
chr2:179247147-179247234
Length
138 bp
Sequences
Splice sites
3' ss Seq
TATGCTTCTGTCTTCTGCAGGCT
3' ss Score
11.94
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
GCACTCAACCAGAATGCTGAACTAAGGAGTCGGTTGAACAGAATACATTCAGAGTCTATTATTTGTGATCAGGTTGTCAGTGTAAATATTATTCCTAGCCCTGATGAG
Seq A exon
GCTGGTGAGCAAATCCATGTCAGTCTCCCCTTATCACAGCAAGTAGCCAATGAGAGCCGCCTCTCCATGTCAGAGTCTGTTTCTGAGTTCTTTGATGCCCAAGAGGTGCTCCTCTCTGCAAGTTCGTCAGAGAATGAG
Seq C2 exon
GCTTCAGATGATGAGTCTTACATCAGTGATGTGAGTGATAATATATCTGAAGACAACACCAGTGTTGCAGACAATATTTCTCGGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000079156-'21-20,'21-19,22-20=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.223 C2=0.687
Domain overlap (PFAM):
C1:
NO
A:
PF0022314=PsaA_PsaB=FE(27.6=100)
C2:
PF0022314=PsaA_PsaB=PD(33.1=83.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTCAACCAGAATGCTGAAC
R:
TGCCGAGAAATATTGTCTGCA
Band lengths:
194-332
Functional annotations
There are 2 annotated functions for this event
PMID: 15212954
This event
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: glutathione s tranferase tag, pull down. ELM ID: ELMI001272; ELM sequence: ESVSEFFDAQE; Overlap: FULL
PMID: 17804640
This event
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: cross linking study, detection by mass spectrometry. ELM ID: ELMI001272; ELM sequence: ESVSEFFDAQE; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)