HsaEX0044928 @ hg19
Exon Skipping
Gene
ENSG00000079156 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:16388]
Coordinates
chr2:179226409-179238754:+
Coord C1 exon
chr2:179226409-179226542
Coord A exon
chr2:179236853-179236960
Coord C2 exon
chr2:179238617-179238754
Length
108 bp
Sequences
Splice sites
3' ss Seq
GTGGTTTTTGTTATTTTAAGGCA
3' ss Score
7.03
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
TGCATTCTCTTTTGAAGTCTGCATTTAATAGCATAGCTATAGAGAAGGAGAAGCTGAAGCAGATGGTTTCCGAGCAGGATCACAGTAAAGGCCACAGCACGCAGATGGCACGGCTCCGACAGTCACTGTCTCAG
Seq A exon
GCACTCAACCAGAATGCTGAACTAAGGAGTCGGTTGAACAGAATACATTCAGAGTCTATTATTTGTGATCAGGTTGTCAGTGTAAATATTATTCCTAGCCCTGATGAG
Seq C2 exon
GCTGGTGAGCAAATCCATGTCAGTCTCCCCTTATCACAGCAAGTAGCCAATGAGAGCCGCCTCTCCATGTCAGAGTCTGTTTCTGAGTTCTTTGATGCCCAAGAGGTGCTCCTCTCTGCAAGTTCGTCAGAGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000079156_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.519 A=0.028 C2=0.223
Domain overlap (PFAM):
C1:
PF0022314=PsaA_PsaB=FE(27.0=100)
A:
NO
C2:
PF0022314=PsaA_PsaB=FE(27.6=100)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATTCTCTTTTGAAGTCTGCA
R:
AGCACCTCTTGGGCATCAAAG
Band lengths:
244-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)