RnoEX0062530 @ rn6
Exon Skipping
Gene
ENSRNOG00000010812 | Osbpl6
Description
oxysterol binding protein-like 6 [Source:RGD Symbol;Acc:1308887]
Coordinates
chr3:63424179-63433816:+
Coord C1 exon
chr3:63424179-63424312
Coord A exon
chr3:63431713-63431820
Coord C2 exon
chr3:63433679-63433816
Length
108 bp
Sequences
Splice sites
3' ss Seq
GTGGTTTCTGTTACTTTAAGGCA
3' ss Score
5.97
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
TGCATTCTCTTCTGAAGTCTGCGTTTAACAGCATAGCTATAGAGAAGGAGAAGCTGAAGCAGATGGTTTCGGAGCAAGATCACAACAAAGGCCACAGCACACAGATGGCCAGGCTCCGACAGTCGCTGTCACAG
Seq A exon
GCACTTAACCAGAACGCTGAGCTCCGGAGTCGACTGAACAGAATACACTCGGAGTCTACCATTTGTGATCACGTTGTCAGTGTAAATATTATCCCTAGCCCTGATGAG
Seq C2 exon
CCTGGTGAGCAGATCCACGCCAACCTCCCCCTGTCACAGCAGGTGGTCAACGAGAGCCGCCTCTCCATGTCGGAATCCGTGTCAGAGTTCTTCGATGCCCAAGAGGTGCTCCTGTCTGCGAGTTCATCGGAGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010812_MULTIEX2-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.572 A=0.312 C2=0.391
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAAGTCTGCGTTTAACAGCA
R:
GATGAACTCGCAGACAGGAGC
Band lengths:
252-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]