BtaINT0106001 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014405 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:HGNC:16388]
Coordinates
chr2:18500520-18502636:-
Coord C1 exon
chr2:18502529-18502636
Coord A exon
chr2:18500658-18502528
Coord C2 exon
chr2:18500520-18500657
Length
1871 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TCTACTTTTCTCTCCTGTAGGCT
3' ss Score
11.79
Exon sequences
Seq C1 exon
GCACTCAACCAGAATGCTGAACTAAGGAGCCGGTTGAACAGAATACATTCAGAATCTATTATTTGTGATCAGGTTGTTAGTGTAAATATTATTCCTAGCCCTGATGAG
Seq A exon
GTAAGATTCATTTTTAAAAGATATAGAATACTTACTTTGTAGCATCTACACCTACTGCATATTTTTATTTATTTTCATAAGGTTCTTTCACTACTAATACAATTCCCGGCATAAATCTTGTGTTGCTGACAGTTCAGTGTTCTTTGGAGTGAAGGATATACATGAGCTTGACATCATTTATTGTTGGTGATCGGTTGTCTATTTTTATTTATTCCTGTGTTCATCTCATGCTACTGATTATTTAATTTATGTATACTCCAGCTTGTGACTTTTATGTCACTCTTCATTTGAAATATTCATTATCATTAATGGTCCATGAAATGTTGAAACAAACACTTTTAGCAGAGAAGGTGCTAAATTAAAGTTTTCTAAAGGTTTGTTTTAAAAGTTCTGTCTAAGGAGAGAAGTCACCTGACCTTGCTAAGAAAATATTATTAGTGCTGCTACAGCTCCTGGTGATGATGCTAATAATGAATGGTTAACACGTGTCAAGTGAATGCTTACCATGTGCTTGGTATTGCTAACCCACTTTACATGTGTTATCTCTTTTGATACCCCCAACAACTCTCTGATGTAGGTGCTGTTATTATTCCATTTTTCAGAAGAATTTTTGAAAAAACAGTAAGAGGATAGGAGAACATTCAGTATTTGGACTTACTGTGAGTGTGTAGTTCCAGTGGCTCAGACGGTAAAGAATCTGTCTGCAATGCAGGAGACCCAGGTTTAATACCTGAATCAGGAAGATCTCCTGGGAAGGGAATGGCAACCCACTCATATTCTTGCTTGGAGAATTCCAGGGACAGAGGAACCTGGTGGGCTAGAGTCCAAGAGTCTCAAAGAGTCAGACACGACTGAGCAACTAACACGTTCATAAAATTATTATTTTTAGCCAGGAGAATTTGTACTTTGAACAGTAATACATGTAACAGGTGAGAGTTTTAACTAATGGTAAGGCCATATTTGCACCAAACATAAATTTTTCTAGAAATCTATAAGTGTAAGGGTTCTGCTATCTAACTGCTTAAGAAATACCATCCCCAGACAGCTTCTCTTGGATGTAAGTTACTGAACCTGTGTCCATCCACCTCCATGGGTCCTGTGATCTCTGATAACACTTATGCCCCCTCAACTGCCCAGAATCTAGAATATTTCTAAAATTTTATCAATTAAAAATTAGTTGACAGTCTCAGTTTGAATCTTCTTTTCAATTTAAAATGTGTACTAAATGTACTAGATGTTTAAAATGTATAGTTCTCTTACCTATTTTTCTGGTTGCAACTTAAATTGCTTTCTTGAAAGCAATATCATTTGCTATCACTGTATGAATAAAAATACAGTTTGAAATAAGGTTCACTACTCTAGTCATATGTTTCATTGGCTAAAATTCATGATCAAATTGGAAAGTGACTTTTTATATCAATATATTCTGTCTCAAAAATTAGTCTTATAGAATGTTTTCTTAGCATATCGCTAGTGGTTTCTACAAATACTTTTTGAGTTGTAGCATACTGGTTAGAATATGGCTAGTAATGACAGGCCAAAGCATATGGCAAAGAACTTGTCGCCACAGTCAATTCAGGGTATTTTGGGGGCTCAACCTGTTATTCAATCCAGTAAATGTCAATTAAGCATAGATTTAAAATCTGCTCACCTTTTGTCTGCACTTTTGGATTCTTCAGGCATATTGGAAGGAAACTTATGCAGTGGTCATTACTCAGTTGCAAGTGAAAATTGCTTGTGCTCACCAGTCCTTTAGCATATGCTGTGAATTTTTCTAGAGATCTGGCTAGTACTTCATTGCCTAATTTGAACAAATAGCCATTCATACGCAGGAAGAAAGTGATCAGACTATCTACTTTTCTCTCCTGTAG
Seq C2 exon
GCTGGTGAGCAAATCCACGTCAGTCTCCCCCTGTCACAGCAAGTAGCCAATGAGAGCCGCCTCTCCATGTCAGAATCTGTCTCTGAGTTCTTCGATGCCCAAGAAGTGCTCCTCTCTGCAAGCTCATCAGAGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014405:ENSBTAT00000019160:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.272
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTCAACCAGAATGCTGAAC
R:
CTCATTCTCTGATGAGCTTGCAGA
Band lengths:
246-2117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]