GgaINT0047057 @ galGal3
Intron Retention
Gene
ENSGALG00000009172 | E1BQU1_CHICK
Description
NA
Coordinates
chr7:16541215-16543659:-
Coord C1 exon
chr7:16543552-16543659
Coord A exon
chr7:16541353-16543551
Coord C2 exon
chr7:16541215-16541352
Length
2199 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TCTCTGTGCGTTATTTGCAGACG
3' ss Score
9.97
Exon sequences
Seq C1 exon
GCTCTCAACCAGAATGCTGAACTAAGGAGTCGCTTGAACAGAATACATTCAGAATCTGTTATTTGTGATCAGGTTGTCAGTGTAAATATTATCCCTAGTCCTGATGAG
Seq A exon
GTAAGACTTCAGCCTTTAATGGATTTAGAATATCATCAAACCCTGCTGTTCCTCACTAATAGCTAAAACGCACGTGCCAAATTATCAGATCTTTCAGGCTGGAAATTGGATATTTGTAGACATTTTCAGACTATATTTTTTCTACATAAAATTTAAACGTTCGTTTTTTATTCTGCACGTGTCATAGCTCATGAAAGAACTCTGGTCTCTGCAGAGAAATAGGGAAGGATTGCAGCTTTGTGGGAATTAATGAAGTTTTACTGTACTGTAACGTAACGCAATAACACACAGTAGGCAACTATTTGTGTATCTTCTCTTTACAAATCAGTAGAACAGTGTAGTGTCTAATGGCAAGTGCTTAAGTTTAATATCTTGAGTAGTATTCAAAGGTTTAGTGTATGAATCTTTTCCTTTCTTCAGTCAAGAGATTATCCAAACATATTACAGATCAGTCTCCCTTGTGAGAAGGACAGATCTGAATTTGCGATCTGTAATATGTTGCAGTTAATACTGTCGTTTTGACAGCCATTCTGCTTGCATTTTACTGAAATACTTTCCATTTCTCATTTCCATTCATTATTTTCTATGCATACATCATTTCAATTAACATACTGTGGTTTCCTAATCATTTTTTTCCAAGAGGAAAGGCAAGTGAAAATCTGCTTCTGGTTACTTTATTTTATTTTTGAAAACATCCCTGCAATTTTTTTGAAGATCCCATCATGTTGTAGACTGACAAAGAGAAGATGGAGGTGACACAGTGCCAGGGCACAGCAACCTGCAGTCGGAGCAGCTGGCAGTGAAGTTCTGAGCAATGACTGTCTCTTCTATTTTGTATTTTTTGCTGCTTAGCTGTTTCTTTTTTAATACGTTATCTTCATTCAAGTGTGTCTGACTGAAAAAGAGTTTCAAAGAGGATCCCAGATCTCTCTTTCACTTCTTCTCTAGATTACTTTATAAATATAATCTTAGTTTATGGAATATGCCTTTGTGAGCATCTTTTTTTATGTATTTTTCCAAGTCCCTCCAGTTGATAAAGAAACTTAATATTTTAACTACTTCTTATAAAGGTAACCCTGAAATGAGCTTCTGTTTCCATTATAATTCATCAAACGTCATAAATCATTCACAAGCTTATAAACCTCAGTTAAAAAGGATGAGTTTTTGACCTCCTGGCTTGTTTGTGACTTTTTTTTTTTTATTGTCAGTGCATTTTGAGGCACATGTAGAAATAGGATGAAGGTGTCATCAAAGCCATTTGCAAGACTTCTGGAGTAAGGTTAATGGAGATGATATTCCAATATGAAGAGAAATTGTGTGTAAAACACATTTGTATTATCCCAGAAATATTATGCTGTATAAATTAAGGAATTAAGTAAGAAGCCTATTTGCCTCCACAGCAGCAGCTTCTTTGGTGGAATAATTCAGAGAGAGAATCTTAAATATTTTGTTCCCCCTTTTCAAGAGCTTGTAGGGTAACGTGCCAAAACATGACGTTCCTCTCATCAAATAGCAGGAAGAAGAAGAAATGTTCAGCTATTTAAATTAGCTTGTCCCTGAATTGATATCCACAGAGCACAGTTTGGGGATTCTTGCATTTGCTGTTCTCTTTAAAATAAACCATAGAGAATGAATTCCCACTAGTAATAGTGAGTCAGTGTTAGTCACTTAATTCAAATGAGATTTGGAATACATATATGGTAGCCACCCTCCTGAATATTGAAACTTTTCAAACATTTATTACTAGACTAGTTAACAAGACCGCTTATTTTGAAGGTAATATATAACTCCCTAGCCTTATTGAGCTTTCAGAGCTGGGTCCAGGTACTATTAGTTGTTATGACCAGGTGTCTTTTCATCTGAATTTCACAGTTGATCTCATTGGGCACAGTGCAGCTATTGTCCATCAAACCATTCCTTTGCATACAGAACTACCTCTGCAATTATTCACTGCTACAGCTTAGCAGCGGGTGGAAGCTGGCCTTAAATGAAGACACGTATCTCACTGCTCAGATTGCACTTTATTTTGTAATCACTCTAGCCTCACTTGTTGAGTACACAAGAAACCCTACTAAAATGCTGTCTTTACTGTCTTTTTCTGTATGTGACACAGAAAAATATTCAGGTCATTTACCGCTTTTATGGGTATTTCTTTATTATTAGAAGTAATATTTTTATTTCTCTGTGCGTTATTTGCAG
Seq C2 exon
ACGGGTGAACAAATTCATGTCAGTTTGCCATTGTCTCAGCAAGTTTCCAATGAGAGCAGGCTCTCTATGTCTGAATCAGTGTCAGAGTTCTTTGATGCACAGGAGGTGCTTTTGTCTGCCAGCTCGTCAGAAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009172:ENSGALT00000014942:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.283
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]