RnoINT0105809 @ rn6
Intron Retention
Gene
ENSRNOG00000010812 | Osbpl6
Description
oxysterol binding protein-like 6 [Source:RGD Symbol;Acc:1308887]
Coordinates
chr3:63431713-63433816:+
Coord C1 exon
chr3:63431713-63431820
Coord A exon
chr3:63431821-63433678
Coord C2 exon
chr3:63433679-63433816
Length
1858 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TCTGCTCCTCTCTCCTGTAGCCT
3' ss Score
10.5
Exon sequences
Seq C1 exon
GCACTTAACCAGAACGCTGAGCTCCGGAGTCGACTGAACAGAATACACTCGGAGTCTACCATTTGTGATCACGTTGTCAGTGTAAATATTATCCCTAGCCCTGATGAG
Seq A exon
GTAAGGGCCATTATTAGTGGATATGGAGTTCCTTTTCTATGGCCTCTAAGTTACTGCATATGTTTTCCTATTGTAATCAGTTATTTTCTGTTAATAATATTCTCTCTATGTGTTAGAGACAGCTCAGTAGTCTTCGAAGTAAAAAGACGTAGGTGAACTTGATATCATTTATTCTCGGTGGTTACTATCTCTCTTGTTTATTTCTATGTTCACCTGACATCGTCAAATAATTTATATATCTATCCCAGCTGGTTAATTTTTACGTCCGTCTTGTCCTTCATTTAACATATTCATTATCAGCAAACATCTGATGAAATGTTGAAAGACATTTCAGCTGAGAAATTGTCACATAAAAAACTGCTTAAAAGCTTTCTTTGGAGGGAGTTGTGTAGGGAAAGAAGCTACCTGTTCTTGCTAAAATCAAAGCTAAGGGTACTGCAAGGCCCCTTCACGATGAATGACACAGACAACGAAAGCCAACAGGGACTGGAAGTGTGGCTCAGTGGTAGGCTGCTTGTCTGGCTCACTACCAGAGGGCCTGGGTTTAGCTAACGGATGTGAAGCAAATGCTCACGGTGTGCACTGAGCAGTTCACATCACATCACGCTGTCATAAGTCACTCTCAACACCCTCCACAGTGCTACTCATAGTTTATATTGAAGAAACGGCATGGAAATAGGAAAACGTTAGGAATGCAGGCTAAAATGCATGTGCGCTTTTGTCGAGTTGCTGATTAATGCTCTCGAGCTTTGCACACAGCAATGGATCTAACGAAAGGAGAGTCTAAACTAAGGCTAAGGCCGTGTTTGCACAGGAGTCGTAATATTTTACTCTGAGTCAGTCTCGTGTTCTGCTTGAAATAACCCAAGGCATCTTACCTTTGGCTGAAGTTGCCCATTCTTCTTTGGGGTCCCGATGAACTGGAATCACACGTATATACACTCGATTGCTCAGAATCTAGGAATACTTCTAAAATTTACCACTTAGAAAGCATTTAGCGCCAGCAAGGTGAGTCAGCAAGTCAAGGAGGGCACCAAGCCTGACGGGCTAAGTTCAGTCCCGGGGAGCCGCAGAGCGGAAGAAGAGTGGACTGCTGCTGCAGGCTGTCCTCAGACCCCCCCACCATGCACATGTGTGCGTGCCCCATACGTACACCCAATACATAATTGAAAATTTTAAAATTACTTTATAATCCTTAATTGGACTCTTCAACCTGAAAAGTGAATTGGAATGTATATAGTTTATTCTTAAATTTTTTTCTCTAATAAAGTTTGGACCATTGCACTTATAAACAATATTTTACTTGAAATGACATTCAGTAGTCTAGACACATTTCATTGGTTTAAAATTCATGATTTAACTGGAAATTTAATTATATATAATCCTATTTCAGAAATGAATCTTATAAATTATCTGTTTAGTAGCCTCTAGAAGTTTCTATAAATACTTCTTGAGGCGTACTTTACTGCTTAGTCCATGACTGGTAATGACAGGCCTAAGACTACAGTCAGTTTACATTTTTTTTTCTTTTCTTTTTTTCGGAGCTGGGGACGGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCGTCGGTTTACATTTTTAATGGAGGTTTTACCTGTTAAATTCCATTTGACATCGAGTTGTAACATCACCCACCGTCTTTCATCTCTGCCTTTCGGAGTCTGTAGACGCGGCAGATGGGATTGTGCATGGTGGCAAGTGAAACTGTCACTAGTGTTAACAGACAGTTTGGCAGTCTCTAGAAATCTAATTCATGTGGCGGAATAGCAATGCTATGTGACTCTGTCGTCTGCTCCTCTCTCCTGTAG
Seq C2 exon
CCTGGTGAGCAGATCCACGCCAACCTCCCCCTGTCACAGCAGGTGGTCAACGAGAGCCGCCTCTCCATGTCGGAATCCGTGTCAGAGTTCTTCGATGCCCAAGAGGTGCTCCTGTCTGCGAGTTCATCGGAGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010812:ENSRNOT00000068199:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.312 A=NA C2=0.391
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTTAACCAGAACGCTGAG
R:
CTCATTCTCCGATGAACTCGCA
Band lengths:
246-2104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]