MmuEX0004854 @ mm9
Exon Skipping
Gene
ENSMUSG00000026965 | Anapc2
Description
anaphase promoting complex subunit 2 [Source:MGI Symbol;Acc:MGI:2139135]
Coordinates
chr2:25134692-25136006:+
Coord C1 exon
chr2:25134692-25134833
Coord A exon
chr2:25135647-25135722
Coord C2 exon
chr2:25135803-25136006
Length
76 bp
Sequences
Splice sites
3' ss Seq
ACAAACTTTTGTCCTTCCAGGGA
3' ss Score
9.92
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
TGAAGTCGAGTTCCAAGCGACGTTCTTCAGACATCATCAGCCTGCTGGTCAGCATCTATGGCAGCAAAGACCTCTTTATCAATGAGTACCGCTCGCTACTTGCAGATCGCCTTCTCCACCAATTCAGCTTCAGCCCTGAGAG
Seq A exon
GGAGATTCGTAATGTGGAGCTGTTGAAGCTGCGCTTTGGTGAAGCCCCCATGCACTTCTGTGAGGTCATGCTCAAG
Seq C2 exon
GACATGGCAGACTCCCGCCGCATCAATGCCAATATCCGAGAGGAGGATGAGAAGCGGCCTGTGGAAGAACAGCCACCATTTGGGGTCTATGCTGTCATATTGTCCAGTGAATTTTGGCCTCCCTTCAAAGATGAGAAGCTGGAGGTCCCTGAGGACATCAGGGCAGCCCTAGACGTTTACTGCAAGAAGTATGAGAAACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026965_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.000 C2=0.147
Domain overlap (PFAM):
C1:
PF0088817=Cullin=FE(12.3=100)
A:
PF0088817=Cullin=FE(6.5=100)
C2:
PF0088817=Cullin=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAATTCAGCTTCAGCCCTG
R:
GGGACCTCCAGCTTCTCATCT
Band lengths:
174-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: