GgaEX1007727 @ galGal3
Exon Skipping
Gene
ENSGALG00000008625 | F1NLT0_CHICK
Description
NA
Coordinates
chr17:2192627-2193716:+
Coord C1 exon
chr17:2192627-2192768
Coord A exon
chr17:2193141-2193216
Coord C2 exon
chr17:2193513-2193716
Length
76 bp
Sequences
Splice sites
3' ss Seq
TCCTTTCTTTCTCTGACCAGGGA
3' ss Score
10.58
5' ss Seq
AAAGTAATT
5' ss Score
3.64
Exon sequences
Seq C1 exon
GGAAATCGAGTTCCAAGCGCCGGTCCTCAGACATCATCAGCCTGCTGGTGAGCATCTATGGCAGCAAGGACCTGTTTATCAACGAGTACCGCACGCTCCTGGCTGACCGGCTGCTGCATCAGTTCAACTACAGTGCTGAGAG
Seq A exon
GGAAATCCGCAACGTGGAGCTGCTCAAGCTGCGGTTTGGCGAAGCTCAGATGCACTATTGTGAAGTCATGTTAAAA
Seq C2 exon
GACATGGCTGACTCGCGACGCATCAACGCCAACATTCGTGATGAGGAGGAAAAGCTCCCGGAGGAGGAGAGGCCGCCGTTCAGCCTCGTGGCCGTTATCCTGTCCAGTGAGTTCTGGCCACCGCTGAAGGAGGAGAAGCTGGAGCTTCCAGAGCAGGTGAAGGAAGCCATGGAAGCCTATTCCAAGAAGTATGAGAAATTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008625-'8-11,'8-10,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=0.000 C2=0.147
Domain overlap (PFAM):
C1:
PF0088817=Cullin=FE(18.7=100)
A:
PF0088817=Cullin=FE(9.9=100)
C2:
PF0088817=Cullin=FE(26.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTCCTCAGACATCATCAGC
R:
TCCTCATCACGAATGTTGGCG
Band lengths:
169-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]