DreEX6013474 @ danRer10
Exon Skipping
Gene
ENSDARG00000105035 | anapc2
Description
anaphase promoting complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-081104-256]
Coordinates
chr5:53926154-53929714:+
Coord C1 exon
chr5:53926154-53926295
Coord A exon
chr5:53929161-53929236
Coord C2 exon
chr5:53929511-53929714
Length
76 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCTTTGTGTTTACAGAGA
3' ss Score
9.25
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
ATAAAACTGGGTCTAAGCGACGTTCTTCTGACATCATCAGTCTGCTGGTCAGCATTTATGGCAGTAAAGAGATCTTCGTTAATGAATACAAGACTGTACTGGCTGACAGACTTCTGCATCAGCTCAACTACAACACAGCCAG
Seq A exon
AGAGATTCGCAATGTTGAGCTGCTGAAACTGAGGTTTGGCGAATCCCATATGCATTATTGTGAAGTGATGCTGAAG
Seq C2 exon
GATGTGGCAGACTCTAGGCGGATCAACTCTAATATCCACGAGGAGGAACGTCGTCTTCCTGCAGAAGAGCAGCCTACATTACCACTGTCTGCCATGATCATTTCATCTGAGTTCTGGCCCCAGCTGAAGGAGGAGAAGATGGAACTCCCTGCAGTCGCCTCTAAAGCCATGGAGGACTACACACACCGCTTTGAGAAACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000105035-'10-14,'10-13,11-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.000 C2=0.206
Domain overlap (PFAM):
C1:
PF0088817=Cullin=FE(8.3=100)
A:
PF0088817=Cullin=FE(4.4=100)
C2:
PF0088817=Cullin=FE(11.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACTGGGTCTAAGCGACGT
R:
GTTGATCCGCCTAGAGTCTGC
Band lengths:
167-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]