RnoEX0009221 @ rn6
Exon Skipping
Gene
ENSRNOG00000011295 | Anapc2
Description
anaphase promoting complex subunit 2 [Source:RGD Symbol;Acc:1305546]
Coordinates
chr3:2496442-2497688:+
Coord C1 exon
chr3:2496442-2496583
Coord A exon
chr3:2497329-2497404
Coord C2 exon
chr3:2497485-2497688
Length
76 bp
Sequences
Splice sites
3' ss Seq
ACAGAAACTTGTCCTTGCAGGGA
3' ss Score
7.01
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
CAAAGTCAAGTTCCAAGCGACGCTCTTCAGACATCATCAGCCTGCTGGTCAGCATCTATGGCAGCAAAGACCTGTTTATCAATGAGTACCGCTCCCTCCTGGCCGATCGCCTCCTCCACCAGTTCAGCTTCAGTCCGGAGAG
Seq A exon
GGAGATTCGTAATGTGGAGCTGTTGAAGCTGCGCTTTGGAGAAGCCCCCATGCACTTCTGTGAGGTCATGCTCAAG
Seq C2 exon
GACATGGCAGATTCCCGCCGCATCAATGCCAATATCCGTGAGGAGGATGAGAAGCGGCCTGTGGAAGAACAGCCACCATTTGGGGTCTATGCCGTCATATTGTCCAGTGAATTTTGGCCTCCCTTCAAAGATGAGAAGCTGGAGGTCCCTGAGGACATCAGGGCAGCCCTGGATGTTTACTGCAAGAAGTATGAGAAACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011295-'13-11,'13-10,15-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.000 C2=0.147
Domain overlap (PFAM):
C1:
PF0088817=Cullin=FE(12.3=100)
A:
PF0088817=Cullin=FE(6.5=100)
C2:
PF0088817=Cullin=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCCACCAGTTCAGCTTCA
R:
GGGACCTCCAGCTTCTCATCT
Band lengths:
180-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]