HsaEX6064236 @ hg38
Exon Skipping
Gene
ENSG00000176248 | ANAPC2
Description
anaphase promoting complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:19989]
Coordinates
chr9:137180181-137180929:-
Coord C1 exon
chr9:137180788-137180929
Coord A exon
chr9:137180452-137180527
Coord C2 exon
chr9:137180181-137180384
Length
76 bp
Sequences
Splice sites
3' ss Seq
CCAGACACTCGTCTTTCCAGGGA
3' ss Score
6.17
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GGAAGTCGAGCTCCAAGCGGCGTTCATCGGACATCATCAGCCTGCTGGTCAGCATCTACGGCAGCAAGGACCTCTTCATCAATGAGTACCGCTCGCTGCTGGCCGACCGCCTGCTGCACCAGTTCAGCTTCAGCCCCGAGCG
Seq A exon
GGAGATCCGCAACGTGGAGCTGCTGAAGCTGCGCTTTGGCGAGGCCCCAATGCACTTCTGTGAAGTCATGCTGAAG
Seq C2 exon
GACATGGCGGACTCCCGCCGCATCAATGCCAACATCCGGGAGGAGGATGAGAAGCGGCCAGCAGAGGAGCAGCCACCGTTCGGGGTCTACGCTGTCATCCTGTCCAGTGAGTTCTGGCCGCCCTTCAAGGACGAGAAGCTGGAGGTCCCCGAGGATATCAGGGCAGCCCTGGAGGCTTACTGCAAGAAGTATGAGCAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176248-'22-27,'22-25,23-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=0.000 C2=0.176
Domain overlap (PFAM):
C1:
PF0088817=Cullin=FE(12.3=100)
A:
PF0088817=Cullin=FE(6.5=100)
C2:
PF0088817=Cullin=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCATCAGCCTGCTGGTC
R:
CTTCTCATCCTCCTCCCGGAT
Band lengths:
167-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains