BtaEX6047552 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3N1P6]
Coordinates
chr11:105907058-105907849:-
Coord C1 exon
chr11:105907708-105907849
Coord A exon
chr11:105907335-105907410
Coord C2 exon
chr11:105907058-105907261
Length
76 bp
Sequences
Splice sites
3' ss Seq
TCAGAGACGCGTGCTTGCAGGGA
3' ss Score
2.63
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
GGAAGTCCAGCTCCAAGCGGCGCTCCTCAGACATCATCAGCCTGCTGGTCAGCATCTATGGCAGCAAGGACCTCTTCATCAATGAGTACCGTTCGCTGCTAGCCGATCGCCTGCTGCACCAGTTCAGCTTCAGCCCTGAGCG
Seq A exon
GGAGATTCGCAACGTGGAGCTGCTGAAACTGCGCTTTGGCGAGGCCCCGATGCACTTCTGTGAGGTCATGCTCAAG
Seq C2 exon
GACATGGCGGACTCGCGCCGCATCAACGCCAACATCCGGGAGGAGGACGAGAAGCGGCCCGCCGAGGAGCAGCCGCCCTTCGGAGTCTATGCCGTCATCCTGTCCAGCGAGTTCTGGCCGCCCTTCAAGGACGAGAAGCTGGAGGTCCCCGAGGACATCAGGGAGGCCCTGGAGGTGTACTGCCGGAAGTACGAGAAGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046223-'13-13,'13-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=0.000 C2=0.191
Domain overlap (PFAM):
C1:
PF0088817=Cullin=FE(17.0=100)
A:
PF0088817=Cullin=FE(9.0=100)
C2:
PF0088817=Cullin=FE(24.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATGAGTACCGTTCGCTGC
R:
AGAACTCGCTGGACAGGATGA
Band lengths:
179-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]