MmuEX0001522 @ mm9
Exon Skipping
Gene
ENSMUSG00000085405 | 4930441J16Rik
Description
RIKEN cDNA 4930441J16 gene [Source:MGI Symbol;Acc:MGI:1921212]
Coordinates
chr2:74136997-74142385:-
Coord C1 exon
chr2:74142247-74142385
Coord A exon
chr2:74138464-74138576
Coord C2 exon
chr2:74136997-74137133
Length
113 bp
Sequences
Splice sites
3' ss Seq
AAAATACATCCATTTCCTAGTAC
3' ss Score
3.32
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTACGGTGAAATGAGAGACAACCCTGGACAAGGAACAGTAGGACAGTCACAGTGCCTAAGCCAAAGGGCTATGTAAGTGGAGACTCAGAGTGAAGACACTGGAGAGACCCTGACATCCTTATTCTGACTCTTCCCTGGG
Seq A exon
TACTCCTGACAGCAGAGTGGTTAAGAAAAGTCTTGAAGCAAGCAGTTCAGTGGCTGGACCGCCACCTACTGGTCATTGTTAGCCACAACTGAGCCGTAGCTTAGGAAAAGAAG
Seq C2 exon
CTTTTTTCCTTAGGTGAGTCCATTCAATAATGACATTAAACCAAAGCCAAAGAAAAATAACTTTACCTAAAAATACGGATGAAGAACCGAACCAAATAAAATTAAGCTGATCTCTTAATAAATGTCTGTTTATTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000085405_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGTGAAATGAGAGACAACCC
R:
TCAGCTTAATTTTATTTGGTTCGGT
Band lengths:
247-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: