MmuEX0001522 @ mm10
Exon Skipping
Gene
ENSMUSG00000085405 | 4930441J16Rik
Description
RIKEN cDNA 4930441J16 gene [Source:MGI Symbol;Acc:MGI:1921212]
Coordinates
chr2:74298940-74304328:-
Coord C1 exon
chr2:74304190-74304328
Coord A exon
chr2:74300407-74300519
Coord C2 exon
chr2:74298940-74299076
Length
113 bp
Sequences
Splice sites
3' ss Seq
AAAATACATCCATTTCCTAGTAC
3' ss Score
3.32
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTACGGTGAAATGAGAGACAACCCTGGACAAGGAACAGTAGGACAGTCACAGTGCCTAAGCCAAAGGGCTATGTAAGTGGAGACTCAGAGTGAAGACACTGGAGAGACCCTGACATCCTTATTCTGACTCTTCCCTGGG
Seq A exon
TACTCCTGACAGCAGAGTGGTTAAGAAAAGTCTTGAAGCAAGCAGTTCAGTGGCTGGACCGCCACCTACTGGTCATTGTTAGCCACAACTGAGCCGTAGCTTAGGAAAAGAAG
Seq C2 exon
CTTTTTTCCTTAGGTGAGTCCATTCAATAATGACATTAAACCAAAGCCAAAGAAAAATAACTTTACCTAAAAATACGGATGAAGAACCGAACCAAATAAAATTAAGCTGATCTCTTAATAAATGTCTGTTTATTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000085405-'4-5,'4-4,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGTGAAATGAGAGACAACCC
R:
TCAGCTTAATTTTATTTGGTTCGGT
Band lengths:
247-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types