MmuEX7001005 @ mm10
Exon Skipping
Gene
ENSMUSG00000085405 | 4930441J16Rik
Description
RIKEN cDNA 4930441J16 gene [Source:MGI Symbol;Acc:MGI:1921212]
Coordinates
chr2:74300407-74307254:-
Coord C1 exon
chr2:74307177-74307254
Coord A exon
chr2:74304190-74304328
Coord C2 exon
chr2:74300407-74300519
Length
139 bp
Sequences
Splice sites
3' ss Seq
ATCCATATGCATCTTAAAAGGTA
3' ss Score
4.58
5' ss Seq
GGGGTAAGC
5' ss Score
7.79
Exon sequences
Seq C1 exon
GCCTGTGAGATTGCTCAGTGGGTAAAGGTGCGTGCTACCAACCCTGAGGATCAGAGTCGGATCTCCAAGGCTCACATG
Seq A exon
GTACGGTGAAATGAGAGACAACCCTGGACAAGGAACAGTAGGACAGTCACAGTGCCTAAGCCAAAGGGCTATGTAAGTGGAGACTCAGAGTGAAGACACTGGAGAGACCCTGACATCCTTATTCTGACTCTTCCCTGGG
Seq C2 exon
TACTCCTGACAGCAGAGTGGTTAAGAAAAGTCTTGAAGCAAGCAGTTCAGTGGCTGGACCGCCACCTACTGGTCATTGTTAGCCACAACTGAGCCGTAGCTTAGGAAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000085405-'3-3,'3-1,4-3=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGGGTAGTCGGGGGATA
R:
ATCAGCTTAATTTTATTTGGTTCGGT
Band lengths:
210-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types