MmuEX0049651 @ mm9
Exon Skipping
Gene
ENSMUSG00000026885 | Ttll11
Description
tubulin tyrosine ligase-like family, member 11 [Source:MGI Symbol;Acc:MGI:1921660]
Coordinates
chr2:35650877-35744900:-
Coord C1 exon
chr2:35744785-35744900
Coord A exon
chr2:35673243-35673341
Coord C2 exon
chr2:35650877-35651122
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTTGTGCTTTCTGCTTTCAGCTT
3' ss Score
10.32
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
CTCTCTCCAGGAGTGTTTGAAAATATCCCCAGCCTGGTGGATGAAGAGGTAAAGGTGGCTGTGATCAGAGACACGCTGCGCCTCATGGACCCGCTGAAGAAGAAAAAGGAGATCCA
Seq A exon
CTTTCCAGATATCTATATGGACAGAAAACACAGAATTCCTCCAGTTTCTGACAGAATGTCTTCATGGAAGCATAAGGGTTCCTCGCTTTCCATAGTCAG
Seq C2 exon
GTCTCAGCAGATGGAAAAGTCTTTCACTTCAAAGGAAGATCTGAACTGTGACCCGACTGGTGGTGACTCCGAGCCCAACCCTGAAGCCCATCTGCCCTCCATTTGCCTCAAGCAGGTGTTCCCCAAGTATGCCAAGCAGTTCAACTACTTGCGCCTCGTGGACAGGATGGCCAATTTGTTCATCCGATTTCTGGGAATCAAGGGGACGATGAAGTTGGGACCAACTGGCTTTCGGACCTTCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026885-'11-12,'11-11,14-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.088 C2=0.266
Domain overlap (PFAM):
C1:
PF0313310=TTL=PD(7.5=59.0)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGGACCCGCTGAAGAAGA
R:
GGCATACTTGGGGAACACCTG
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types