BtaEX0038237 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012827 | TTLL11
Description
TTLL11 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:A7E2Z5]
Coordinates
chr11:92737269-92851404:-
Coord C1 exon
chr11:92851289-92851404
Coord A exon
chr11:92766788-92766886
Coord C2 exon
chr11:92737269-92741514
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATTATGCTTTCTGATTTCAGCTT
3' ss Score
7.13
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
CTCTCTCCAGGGGTATTTGAGAATGTCCCCAGTCTTGTCGATGAAGAAGTGAAAGTGGCCGTGATCAGAGACACACTGCGTCTCATGGACCCACTTAAAAAGAAAAGAGAGAGCCA
Seq A exon
CTTTCCAGATATCTATATGGACAGAAAACACAGATTCCCTCCAGTTTCTGAAAGAATGTCTTCATTGAAGCTTCAGCTTTCGAAGCTTTCCATAGTCAG
Seq C2 exon
GTCTCAGCTGCTGGGGAAGTCGTTAGCCTCAAAAGAAAATCCTCCTCACAGCGATCTGGCCAGCGCCTCACAGGGCAACGCCAACCCCGACGCCCACCTGCCCTCCATCTGCCTCAAGCAGGTGTTCCCCAAGTATGCAAAGCAGTTCAACTACCTGCGCCTGGTGGACAGGATGGCAAACCTGTTTATCCGCTTCCTGGGAATCAAGGGGACGATGAAGTTGGGACCAACAGGCTTCCGTACCTTCATCAGGTCAGTGAGACCAGCCCCCTCTGGCTGGGGTTCAGGCAGCCTGGAGACCAGCCTGACATCTGGCTGGCCCCTTCTCCCAGACTGCCCCTGGGAGAATCTGTGATGCCAGATTGGGCCCCACTGGGTTGGGATTGGCCCAGCAGCTGGCACTGGGCCTGGCATATAGTACACTCTTGTTCGTTGAACGAATTAATGAATGCTACAGATGTGAGAGCATTCACAACCTTGTGCTTGTGGTTAAAAACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012827_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.148
Domain overlap (PFAM):
C1:
PF0313310=TTL=PD(10.4=66.7)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000017043fB7463
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGTCTCATGGACCCACTTA
R:
CTTGGGGAACACCTGCTTGAG
Band lengths:
173-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development