RnoEX0002989 @ rn6
Exon Skipping
Gene
ENSRNOG00000019339 | AABR07051518.1
Description
tubulin tyrosine ligase like11 [Source:NCBI gene;Acc:689746]
Coordinates
chr3:15131232-15225751:-
Coord C1 exon
chr3:15225636-15225751
Coord A exon
chr3:15155694-15155792
Coord C2 exon
chr3:15131232-15131474
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTTATGCTTTCTGATTTCAGCTT
3' ss Score
7.52
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
CTTTCTCCAGGAGTGTTTGAAAATATCCCCAGCCTGGTGGACGAAGAAGTGAAGGTGGCCGTGATCAGAGACACGCTGCGCCTCATGGACCCGATGAAGAAGAAAAGGGAGATCCA
Seq A exon
CTTTCCAGATATCTGTATGGACAGAAAACACAGAATCCCTCCAGTTTCTGACAGAATGTCTTCATGGAAGCGTAAGGGTTCCTCGCTTCCCATAGTCAG
Seq C2 exon
GTCTCAGCAGATGGATAAGCCTTTCGCTGCAAAGGAAGATCTGAACTGTGACCTGGCCGGAGACTTCGAGCCCAACCCTGAAGCCCATTTGCCCTCCATTTGCCTCAAGCAGGTGTTCCCCAAGTATGCCAAGCAGTTCAATTACCTGCGCCTGGTAGACAGGATGGCCAATTTGTTCATCCGATTCCTGGGAATCAAGGGGACAATGAAGTTGGGACCAACTGGCTTTCGGACCTTCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019339_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=0.088 C2=0.018
Domain overlap (PFAM):
C1:
PF0313310=TTL=PD(10.0=76.9)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000032204fB141
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGAAGAAGTGAAGGTGGCC
R:
AAATGGAGGGCAAATGGGCTT
Band lengths:
178-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]