MmuEX0049651 @ mm10
Exon Skipping
Gene
ENSMUSG00000026885 | Ttll11
Description
tubulin tyrosine ligase-like family, member 11 [Source:MGI Symbol;Acc:MGI:1921660]
Coordinates
chr2:35795357-35889380:-
Coord C1 exon
chr2:35889265-35889380
Coord A exon
chr2:35817723-35817821
Coord C2 exon
chr2:35795357-35795602
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTTGTGCTTTCTGCTTTCAGCTT
3' ss Score
10.32
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
CTCTCTCCAGGAGTGTTTGAAAATATCCCCAGCCTGGTGGATGAAGAGGTAAAGGTGGCTGTGATCAGAGACACGCTGCGCCTCATGGACCCGCTGAAGAAGAAAAAGGAGATCCA
Seq A exon
CTTTCCAGATATCTATATGGACAGAAAACACAGAATTCCTCCAGTTTCTGACAGAATGTCTTCATGGAAGCATAAGGGTTCCTCGCTTTCCATAGTCAG
Seq C2 exon
GTCTCAGCAGATGGAAAAGTCTTTCACTTCAAAGGAAGATCTGAACTGTGACCCGACTGGTGGTGACTCCGAGCCCAACCCTGAAGCCCATCTGCCCTCCATTTGCCTCAAGCAGGTGTTCCCCAAGTATGCCAAGCAGTTCAACTACTTGCGCCTCGTGGACAGGATGGCCAATTTGTTCATCCGATTTCTGGGAATCAAGGGGACGATGAAGTTGGGACCAACTGGCTTTCGGACCTTCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026885_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.088 C2=0.262
Domain overlap (PFAM):
C1:
PF0313310=TTL=PD(7.5=59.0)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGGACCCGCTGAAGAAGA
R:
GGCATACTTGGGGAACACCTG
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types