MmuEX0027378 @ mm9
Exon Skipping
Gene
ENSMUSG00000026765 | Lypd6b
Description
LY6/PLAUR domain containing 6B [Source:MGI Symbol;Acc:MGI:1919147]
Coordinates
chr2:49786445-49798116:+
Coord C1 exon
chr2:49786445-49786504
Coord A exon
chr2:49790282-49790347
Coord C2 exon
chr2:49797965-49798116
Length
66 bp
Sequences
Splice sites
3' ss Seq
TGTTTACTTTCTGTCTTAAGGAG
3' ss Score
7.86
5' ss Seq
GAGGTATTA
5' ss Score
6.46
Exon sequences
Seq C1 exon
GTGTCCTTGAATGAGAGAAACAAGGACTAGAAGAGGAGGAAGAAGACTTGGGTAAGGAAG
Seq A exon
GAGTTTCCCTAGAAGATGGAATGTTTCAGTCCAAAGACGCCTGGAAATGTGCTCTAGTTTTCAGAG
Seq C2 exon
ACACACGACTTTGACCTGCCCAATCAGGGTGGACAGAATGCTGCTCCTCTGCCACATTCTAGCTGTCACCATCCTTCAGATCTTGATCATCTCAGAGAACTGGGTGTTTGCAAAGAACATCAACTTCTACAATGTGAGGCCCCCTCTTGATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026765-'9-13,'9-11,10-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAGGAAGAAGACTTGGGT
R:
AGGGGGCCTCACATTGTAGAA
Band lengths:
174-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: