MmuEX0027378 @ mm10
Exon Skipping
Gene
ENSMUSG00000026765 | Lypd6b
Description
LY6/PLAUR domain containing 6B [Source:MGI Symbol;Acc:MGI:1919147]
Coordinates
chr2:49930925-49942596:+
Coord C1 exon
chr2:49930925-49930984
Coord A exon
chr2:49934762-49934827
Coord C2 exon
chr2:49942445-49942596
Length
66 bp
Sequences
Splice sites
3' ss Seq
TGTTTACTTTCTGTCTTAAGGAG
3' ss Score
7.86
5' ss Seq
GAGGTATTA
5' ss Score
6.46
Exon sequences
Seq C1 exon
GTGTCCTTGAATGAGAGAAACAAGGACTAGAAGAGGAGGAAGAAGACTTGGGTAAGGAAG
Seq A exon
GAGTTTCCCTAGAAGATGGAATGTTTCAGTCCAAAGACGCCTGGAAATGTGCTCTAGTTTTCAGAG
Seq C2 exon
ACACACGACTTTGACCTGCCCAATCAGGGTGGACAGAATGCTGCTCCTCTGCCACATTCTAGCTGTCACCATCCTTCAGATCTTGATCATCTCAGAGAACTGGGTGTTTGCAAAGAACATCAACTTCTACAATGTGAGGCCCCCTCTTGATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026765-'21-18,'21-15,22-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAGGAAGAAGACTTGGGT
R:
AGGGGGCCTCACATTGTAGAA
Band lengths:
174-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types