RnoEX0051593 @ rn6
Exon Skipping
Gene
ENSRNOG00000004614 | Lypd6b
Description
LY6/PLAUR domain containing 6B [Source:RGD Symbol;Acc:1562767]
Coordinates
chr3:35417622-35428308:+
Coord C1 exon
chr3:35417622-35417681
Coord A exon
chr3:35419552-35419628
Coord C2 exon
chr3:35428063-35428308
Length
77 bp
Sequences
Splice sites
3' ss Seq
TGTTTACTTCCTGTCTTAAGGAG
3' ss Score
6.79
5' ss Seq
GAGGTTTTA
5' ss Score
-1.21
Exon sequences
Seq C1 exon
GTGTGCTTGAATGAGAGAAGCAAGGAATAGAAGAAGAGGAGGAAGACTTGGGTGAGGAAG
Seq A exon
GAGCTTCCACAGTAGATGGAATGTTTCAGTCCAAGGATGCCTGGAAATTGTTGTCCCACATGGTCTAGTTTTCAGAG
Seq C2 exon
GTGGAATAATTGACCTTTCCGTGCAGAAGCAGAACATACCTCTTGTTGACGTCTAAAACCAAATGAGCTGACCCAGTCCGTGTTTTCATGGCAGACACACGACTTTGACCTGCCCAGTCAAGGAGTTCAGAATGCTGCTCCTCTGCCACATTCTAGCCGTGACCATCCTTCAGATCTTGGTCATCTCAGAAAACTGGGTGTTTGCTAAGAACATCAACTTCTACAATGTGAGGCCCCCTCTCGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004614_MULTIEX1-3/5=2-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGAAGACTTGGGTGAGG
R:
GCTAGAATGTGGCAGAGGAGC
Band lengths:
181-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]