MmuEX6101454 @ mm9
Exon Skipping
Gene
ENSMUSG00000026987 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:MGI Symbol;Acc:MGI:2442782]
Coordinates
chr2:60044183-60047216:-
Coord C1 exon
chr2:60047079-60047216
Coord A exon
chr2:60044852-60045020
Coord C2 exon
chr2:60044183-60044617
Length
169 bp
Sequences
Splice sites
3' ss Seq
TCTACTATTTAAATTTATAGGTA
3' ss Score
7.47
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
Exon sequences
Seq C1 exon
CGAGAAGAAACTTTCAGAAACCACGGTGAATGTGGTTAAACTAAGATGTAAATGAGGACTAAGAAATGCAAGAGAGTATGGGAAAAGCCACAAATTATGTGGCGTTTCAATGATGGACCAAACGCAAGTTGTTTAACG
Seq A exon
GTAGCGCCTGGCATGGTGGCGCACACCTGTAATCCCAGCACTCGAACTCAGGAGACGGAGGCAGGAGGATCACAAGTTCAAGGCCAGCCTGGGCTACAGAGTTCCAAGCCAGCCTGGACTATGAGACTCTGACTCAAATAAACAAAAACTAATAAAAATAAACGTATAG
Seq C2 exon
CAAAAAGTTTGCTCTCCAAAGGTAGCCTTGAAAGTATAAGAACACGTGAAATGAAACCAGCCTGCCACCCTGAGAAACTGCTCTCACGCTGCACCTTCAGCATAGGTCTCATTTTCAGAGACTGCAGTCACTCACAGCTCTTCCAGACTCTGTCCTAGCCAAGATGACTTCCAATCCATGGGGCACAGGTTCCTTTTACACTGCTTAAAACCTAGGGTGTGGGGCTGGAGAGCTGGCTCAGAGGGTAAGAGCGCTTGGAGTTCCCAACATCCAGTGTCTCACAAGTGCCTGTACCTCCAGCTGCAAAGCAGCCGATTCCCTTTTCAAGCCTTCGAGGGCACTGCATTGATTTGCACAAGCCATCATACTGATACACACATACACATCTAATTAAAAAGTTAAATCTTAAAAAATTAAAATGTGTTTAGTGAAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026987-'1-3,'1-2,3-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCGTTTCAATGATGGACC
R:
AGTGTAAAAGGAACCTGTGCCC
Band lengths:
242-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: