MmuEX6101454 @ mm10
Exon Skipping
Gene
ENSMUSG00000026987 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:MGI Symbol;Acc:MGI:2442782]
Coordinates
chr2:60161435-60209839:-
Coord C1 exon
chr2:60209713-60209839
Coord A exon
chr2:60206795-60206963
Coord C2 exon
chr2:60161435-60161534
Length
169 bp
Sequences
Splice sites
3' ss Seq
TCTACTATTTAAATTTATAGGTA
3' ss Score
7.47
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
Exon sequences
Seq C1 exon
GGCGGCGCTGGCGGCGCTGCGGGGGAGCCGGGAGCTGCGGGCGGGCTAGACGTGCCCCGCCGCGGGGTGGTGCTCTGACTGCGGCAGCCGTTGAGGGCCGCCTCGGGGGAAGCTGCGAGGCGCCACG
Seq A exon
GTAGCGCCTGGCATGGTGGCGCACACCTGTAATCCCAGCACTCGAACTCAGGAGACGGAGGCAGGAGGATCACAAGTTCAAGGCCAGCCTGGGCTACAGAGTTCCAAGCCAGCCTGGACTATGAGACTCTGACTCAAATAAACAAAAACTAATAAAAATAAACGTATAG
Seq C2 exon
ACCTGTGCTACCAGAAGTGACAATGGAAGTCCCTCCTGTGAAGAGGAAAGGACACTGACAACGTGTGGATCCTCAGGAGCAAACCAAGTCAGCAGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026987_CASSETTE6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGGTGGTGCTCTGACT
R:
TGTCTGCTGACTTGGTTTGCT
Band lengths:
163-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types