RnoEX0014174 @ rn6
Exon Skipping
Gene
ENSRNOG00000056984 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:RGD Symbol;Acc:1309801]
Coordinates
chr3:46230023-46286637:-
Coord C1 exon
chr3:46286537-46286637
Coord A exon
chr3:46283688-46283856
Coord C2 exon
chr3:46230023-46230123
Length
169 bp
Sequences
Splice sites
3' ss Seq
TCTACTATTTAAATTTATAGGTA
3' ss Score
7.47
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
Exon sequences
Seq C1 exon
GCCGGGAGCTGCGGGCGGGCTAGACGTGCCCCGCCGCGGGGTGGTGCTCTGACTGCGGCAGCCGTTGAGGGCCGCCTCGGGGGAAGCTGCGAGGCGCCACG
Seq A exon
GTAGCGCCTGGCATGGTGGCGCACACCTGTAATCCCAGCAATCGAACTCAGGAGGCGGAGGCAGGAGGATCACAAGTTCAAGGCCAGCCTGGGCTACAGAGTTCCAAGCCAGCCTGGGCTATGAAACTCTGACTCAAATAAACAAAAAATAATAAAAATAAACATATAG
Seq C2 exon
ACCTGTGCTACCAGAAGTGACAATGGAAGTCCCTCCTGTGAAGAGGAAAGGACCCTAACAGAAAGTGAGGATCCTCAGGAGCAAGTGGAGGTCAGCAGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056984-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGTGCTCTGACTGCG
R:
GTCTGCTGACCTCCACTTGC
Band lengths:
162-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]