MmuEX0038428 @ mm9
Exon Skipping
Gene
ENSMUSG00000035437 | Rabgap1
Description
RAB GTPase activating protein 1 [Source:MGI Symbol;Acc:MGI:2385139]
Coordinates
chr2:37396553-37398751:+
Coord C1 exon
chr2:37396553-37396696
Coord A exon
chr2:37398157-37398198
Coord C2 exon
chr2:37398623-37398751
Length
42 bp
Sequences
Splice sites
3' ss Seq
TGTTGTCTCTTCTCTTTTAGGGA
3' ss Score
12.82
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
GAATACATTCCTGACCTGTACAACCACTTCCTGGATATCAGCCTTGAAGCACACATGTACGCCTCCCAGTGGTTCCTTACACTTTTCACTGCAAAATTCCCTCTCTACATGGTCTTCCATATCATCGACCTGCTCTTATGTGAG
Seq A exon
GGAATAAGTGTCATCTTTAATGTCGCCCTTGGATTACTAAAG
Seq C2 exon
ACTTCCAAGGATGACTTGCTGTTGACAGACTTTGAGGGTGCCTTGAAGTTCTTCAGGGTTCAGCTCCCTAAAAGATACCGCTCAGAAGAAAATGCAAAGAGGCTCATGGAGCTTGCCTGTAACACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035437_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(23.0=100)
A:
PF0056613=RabGAP-TBC=FE(6.4=100)
C2:
PF0056613=RabGAP-TBC=PD(2.9=14.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGCACACATGTACGCCTC
R:
AGGCACCCTCAAAGTCTGTCA
Band lengths:
143-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: