GgaEX0001358 @ galGal4
Exon Skipping
Gene
ENSGALG00000001225 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr17:8866515-8868737:+
Coord C1 exon
chr17:8866515-8866658
Coord A exon
chr17:8868213-8868254
Coord C2 exon
chr17:8868609-8868737
Length
42 bp
Sequences
Splice sites
3' ss Seq
TTTGTCATTTTTCTCTCTAGGGA
3' ss Score
12.03
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GAATACATTCCTGATCTGTATAACCACTTCCTGGACATCAGCCTTGAAGCACACATGTATGCTTCCCAGTGGTTCCTTACATTGTTCACGGCAAAATTCCCTCTCTACATGGTCTTCCATATTATTGACTTACTCTTATGTGAG
Seq A exon
GGAATAAGTGTTATCTTTAACGTTGCACTGGGATTATTAAAA
Seq C2 exon
ACTACCAAGGATGACTTGTTACTGACCGACTTCGAAGGGGCTTTAAAGTTCTTCCGTGTACAGCTGCCCAAGAGGTACCGCTCAGAGGAGAATGCAAAAAAGCTGATGGAGTTAGCCTGTAACATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001225_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(23.0=100)
A:
PF0056613=RabGAP-TBC=FE(6.4=100)
C2:
PF0056613=RabGAP-TBC=PD(2.9=14.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCCTTGAAGCACACATGT
R:
CCCCTTCGAAGTCGGTCAGTA
Band lengths:
147-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]