BtaEX6046023 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039172 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr11:94233813-94235907:+
Coord C1 exon
chr11:94233813-94233956
Coord A exon
chr11:94235500-94235541
Coord C2 exon
chr11:94235779-94235907
Length
42 bp
Sequences
Splice sites
3' ss Seq
TTCTCTGTTTTCTCTTTTAGGGA
3' ss Score
14.15
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GAGTACATCCCTGACCTGTACAACCACTTCCTGGACATAAGCCTTGAAGCGCACATGTATGCCTCCCAGTGGTTTCTTACGCTCTTCACTGCGAAGTTCCCTCTGTACATGGTCTTCCATATCATCGACCTGCTTTTATGTGAG
Seq A exon
GGAATAAGTGTTATATTTAACGTCGCCCTTGGGTTATTAAAG
Seq C2 exon
ACTTCCAAAGATGACTTGCTACTGACAGACTTTGAAGGTGCCCTGAAATTCTTCAGGGTTCAGCTTCCTAAGAGATACCGCTCAGAAGAAAATGCAAAAAAACTAATGGAACTAGCTTGCAACATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039172-'37-34,'37-33,38-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(23.0=100)
A:
PF0056613=RabGAP-TBC=FE(6.4=100)
C2:
PF0056613=RabGAP-TBC=PD(2.9=14.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAAGCGCACATGTATGCCT
R:
GGCACCTTCAAAGTCTGTCAGT
Band lengths:
143-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]