MmuEX6100326 @ mm9
Exon Skipping
Gene
ENSMUSG00000000194 | Gpr107
Description
G protein-coupled receptor 107 [Source:MGI Symbol;Acc:MGI:2139054]
Coordinates
chr2:31063199-31066090:+
Coord C1 exon
chr2:31063199-31063248
Coord A exon
chr2:31064587-31064670
Coord C2 exon
chr2:31065969-31066090
Length
84 bp
Sequences
Splice sites
3' ss Seq
TGCTTTCCTCTTTCCTGCAGATT
3' ss Score
12.58
5' ss Seq
CAGGTCTGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
CTGCCATTAACTTAGCGAAGCTGAGGCTTTTCAGACATTACTACGTCTTG
Seq A exon
ATTGTGTGCTACATCTACTTTACCAGGATCATCGCCTTCCTTCTCAAGTTTGCTGTTCCATTCCAGTGGAAGTGGCTCTACCAG
Seq C2 exon
CTGCTGGATGAAACAGCCACGCTGGTGTTCTTTGTCCTGACGGGGTATAAATTTCGCCCAGCTTCAGATAACCCCTACCTGCAGCTCTCTCAGGAAGATGATGACCTGGAGATGGAGTCCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000194-'30-33,'30-31,31-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(5.5=100)
A:
PF068148=Lung_7-TM_R=FE(9.2=100)
C2:
PF068148=Lung_7-TM_R=PD(8.2=58.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAGGCTTTTCAGACATTACT
R:
CGGACTCCATCTCCAGGTCAT
Band lengths:
152-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: