DreEX6011744 @ danRer10
Exon Skipping
Gene
ENSDARG00000103200 | gpr107
Description
G protein-coupled receptor 107 [Source:ZFIN;Acc:ZDB-GENE-061103-130]
Coordinates
chr5:31870526-31872490:-
Coord C1 exon
chr5:31872441-31872490
Coord A exon
chr5:31871519-31871602
Coord C2 exon
chr5:31870526-31870647
Length
84 bp
Sequences
Splice sites
3' ss Seq
TATGTTTTTCTGGGTTGCAGATT
3' ss Score
9.04
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CTGCCATCAATCTGGCTCAACTGAAACTATTTAGGCACTACTATGTGATG
Seq A exon
ATTGTATGCTATATTTATTTCACCCGCATCATTGCCAGTCTCATCAAGGTCATTGTTCCTTTCCAGTGGAAGTGGCTTTACCAG
Seq C2 exon
TTGATGAATGAGCTGGCCACTCTGACCTTCTTCTTCTTAACTGGACACAAGTTCCGGCCAGCCTCCTACAACCCTTACCTGCTGTTGTCTGTGGAGGATGAAGACATGGAGATGGACGATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103200-'19-24,'19-23,20-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(5.4=100)
A:
PF068148=Lung_7-TM_R=FE(9.1=100)
C2:
PF068148=Lung_7-TM_R=PD(8.1=58.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCAATCTGGCTCAACTGA
R:
ACATCGTCCATCTCCATGTCT
Band lengths:
169-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]